Miyakogusa Predicted Gene

Lj0g3v0359119.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0359119.1 tr|D4HTS9|D4HTS9_9MAGN ARF4 protein OS=Cabomba
aquatica GN=ARF4 PE=2 SV=1,27.71,2e-16, ,CUFF.24706.1
         (969 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS350751 similar to UniRef100_Q2HSV9 Cluster: Transcrip...   180   1e-44
gnl|LJGI|TC82651 similar to UniRef100_A7PHQ5 Cluster: Chromosome...    54   2e-06

>gnl|LJGI|FS350751 similar to UniRef100_Q2HSV9 Cluster: Transcriptional factor B3;
           Auxin response factor; Aux/IAA_ARF_dimerisation; n=1;
           Medicago truncatula|Rep: Transcriptional factor B3;
           Auxin response factor; Aux/IAA_ARF_dimerisation -
           Medicago truncatula (Barrel medic), partial (17%)
          Length = 678

 Score =  180 bits (91), Expect = 1e-44
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                       
Query: 848 taaactcctgtaaactattcgggtttcctttgtctggggaaactagtccccaaaatttac 907
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taaactcctgtaaactattcgggtttcctttgtctggggaaactagtccccaaaatttac 619

                                          
Query: 908 agaaccctgctaaaaggagttgcacaaaggt 938
           |||||||||||||||||||||||||||||||
Sbjct: 618 agaaccctgctaaaaggagttgcacaaaggt 588


>gnl|LJGI|TC82651 similar to UniRef100_A7PHQ5 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (18%)
          Length = 757

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 454 tttccaagggtcttgcaaggtcaagaa 480
           |||||||||||||||||||||||||||
Sbjct: 81  tttccaagggtcttgcaaggtcaagaa 107