Miyakogusa Predicted Gene

Lj0g3v0358879.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0358879.1 tr|F4K5W6|F4K5W6_ARATH tRNA-splicing endonuclease
positive effector-related protein OS=Arabidopsis
t,39.24,4e-17,SUBFAMILY NOT NAMED,NULL; DNA2/NAM7 HELICASE
FAMILY,NULL; AAA_11,NULL; P-loop containing nucleoside ,CUFF.24688.1
         (1210 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76384 weakly similar to UniRef100_A7QTT0 Cluster: Chr...   129   4e-29
gnl|LJGI|FS329076 similar to UniRef100_A7QTT2 Cluster: Chromosom...    66   5e-10

>gnl|LJGI|TC76384 weakly similar to UniRef100_A7QTT0 Cluster: Chromosome undetermined
            scaffold_171, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_171, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (28%)
          Length = 1457

 Score =  129 bits (65), Expect = 4e-29
 Identities = 176/213 (82%)
 Strand = Plus / Plus

                                                                        
Query: 928  ttttgcttgtctaaggcaagcataattttatgcactgcaacaagttctattaaactggac 987
            ||||||||||| |  ||| |||||||||||||||||||| |||| ||| |||||||  ||
Sbjct: 197  ttttgcttgtccattgcatgcataattttatgcactgcatcaagctctgttaaactatac 256

                                                                        
Query: 988  gcacaaggggagaacccggtgcaatttttagtaattgatgaagcagcacagctcaaagag 1047
             || || ||  ||   |  |||||||| ||||| ||||||||||||| ||  | || || 
Sbjct: 257  acagaacggatgagatcactgcaatttctagtagttgatgaagcagctcaattaaaggaa 316

                                                                        
Query: 1048 tgtgaatcaaccattccattacagctgtcaggtctcagccattgcatcctaataggcgat 1107
            |||||||| ||||||||||| |||||  ||||||||  |||||||||||||||||| |||
Sbjct: 317  tgtgaatcgaccattccattgcagcttccaggtctccaccattgcatcctaataggtgat 376

                                             
Query: 1108 gagagacagcttcctgcattggtgaaaagcagg 1140
            |||| ||||||||| |||||||| |||||||||
Sbjct: 377  gagaaacagcttccagcattggttaaaagcagg 409


>gnl|LJGI|FS329076 similar to UniRef100_A7QTT2 Cluster: Chromosome undetermined
            scaffold_171, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_171, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (7%)
          Length = 717

 Score = 65.9 bits (33), Expect = 5e-10
 Identities = 99/121 (81%)
 Strand = Plus / Plus

                                                                        
Query: 947  gcataattttatgcactgcaacaagttctattaaactggacgcacaaggggagaacccgg 1006
            |||||||||||||||||||| |||||||| |||||||  || || || ||  ||   | |
Sbjct: 596  gcataattttatgcactgcatcaagttctgttaaactatacacagaacggatgagatcag 655

                                                                        
Query: 1007 tgcaatttttagtaattgatgaagcagcacagctcaaagagtgtgaatcaaccattccat 1066
            |||||||| ||||| ||||||||||||| ||  | || || |||||||| ||||||||||
Sbjct: 656  tgcaatttctagtagttgatgaagcagctcaattaaaggaatgtgaatcgaccattccat 715

             
Query: 1067 t 1067
            |
Sbjct: 716  t 716