Miyakogusa Predicted Gene
- Lj0g3v0358879.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0358879.1 tr|F4K5W6|F4K5W6_ARATH tRNA-splicing endonuclease
positive effector-related protein OS=Arabidopsis
t,39.24,4e-17,SUBFAMILY NOT NAMED,NULL; DNA2/NAM7 HELICASE
FAMILY,NULL; AAA_11,NULL; P-loop containing nucleoside ,CUFF.24688.1
(1210 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76384 weakly similar to UniRef100_A7QTT0 Cluster: Chr... 129 4e-29
gnl|LJGI|FS329076 similar to UniRef100_A7QTT2 Cluster: Chromosom... 66 5e-10
>gnl|LJGI|TC76384 weakly similar to UniRef100_A7QTT0 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(28%)
Length = 1457
Score = 129 bits (65), Expect = 4e-29
Identities = 176/213 (82%)
Strand = Plus / Plus
Query: 928 ttttgcttgtctaaggcaagcataattttatgcactgcaacaagttctattaaactggac 987
||||||||||| | ||| |||||||||||||||||||| |||| ||| ||||||| ||
Sbjct: 197 ttttgcttgtccattgcatgcataattttatgcactgcatcaagctctgttaaactatac 256
Query: 988 gcacaaggggagaacccggtgcaatttttagtaattgatgaagcagcacagctcaaagag 1047
|| || || || | |||||||| ||||| ||||||||||||| || | || ||
Sbjct: 257 acagaacggatgagatcactgcaatttctagtagttgatgaagcagctcaattaaaggaa 316
Query: 1048 tgtgaatcaaccattccattacagctgtcaggtctcagccattgcatcctaataggcgat 1107
|||||||| ||||||||||| ||||| |||||||| |||||||||||||||||| |||
Sbjct: 317 tgtgaatcgaccattccattgcagcttccaggtctccaccattgcatcctaataggtgat 376
Query: 1108 gagagacagcttcctgcattggtgaaaagcagg 1140
|||| ||||||||| |||||||| |||||||||
Sbjct: 377 gagaaacagcttccagcattggttaaaagcagg 409
>gnl|LJGI|FS329076 similar to UniRef100_A7QTT2 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(7%)
Length = 717
Score = 65.9 bits (33), Expect = 5e-10
Identities = 99/121 (81%)
Strand = Plus / Plus
Query: 947 gcataattttatgcactgcaacaagttctattaaactggacgcacaaggggagaacccgg 1006
|||||||||||||||||||| |||||||| ||||||| || || || || || | |
Sbjct: 596 gcataattttatgcactgcatcaagttctgttaaactatacacagaacggatgagatcag 655
Query: 1007 tgcaatttttagtaattgatgaagcagcacagctcaaagagtgtgaatcaaccattccat 1066
|||||||| ||||| ||||||||||||| || | || || |||||||| ||||||||||
Sbjct: 656 tgcaatttctagtagttgatgaagcagctcaattaaaggaatgtgaatcgaccattccat 715
Query: 1067 t 1067
|
Sbjct: 716 t 716