Miyakogusa Predicted Gene

Lj0g3v0356019.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0356019.1 Non Chatacterized Hit- tr|J3LSI4|J3LSI4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,52.53,5e-17,coiled-coil,NULL; seg,NULL,CUFF.24538.1
         (372 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO010483                                                     680   0.0  

>gnl|LJGI|GO010483 
          Length = 585

 Score =  680 bits (343), Expect = 0.0
 Identities = 363/372 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcactaactgttacagttaacaagtatgcttcatccaatttgcaagcagttcataga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61  atggcactaactgttacagttaacaagtatgctccatccaatttgcaagcagttcataga 120

                                                                       
Query: 61  acacaagaaaaagcaggaaaccaaaccacaccaacattgagcaccaatggggaagtggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acacaagaaaaagcaggaaaccaaaccacaccaacattgagcaccaatggggaagtggga 180

                                                                       
Query: 121 aggagaggactcatcttatctactgcaattgccaccacccaagtacctgaatctaggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggagaggactcatcttatctactgcaattgccaccacccaagtacctgaatctaggact 240

                                                                       
Query: 181 cagcttctnnnnnnntatcagaagaaatctgaggaaaacaaggagaaaaatgacaaagag 240
           ||||||||       ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 cagcttctaaaaaaatatcagaagaaatctgaggaaaacaaggagaaaaatggcaaagag 300

                                                                       
Query: 241 agactggatagttattacaagcgtaactacaaggattactttgaattgatggaagggact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agactggatagttattacaagcgtaactacaaggattactttgaattgatggaagggact 360

                                                                       
Query: 301 ttgaagggaaaagatggggagctttcagaaacagaaaagggtatccgtgattggcttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgaagggaaaagatggggagctttcagaaacagaaaagggtatccgtgattggcttcaa 420

                       
Query: 361 agtaacaagtga 372
           ||||||||||||
Sbjct: 421 agtaacaagtga 432