Miyakogusa Predicted Gene
- Lj0g3v0354159.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0354159.1 tr|G7IAW3|G7IAW3_MEDTR 60S ribosomal protein L7
OS=Medicago truncatula GN=MTR_1g108780 PE=4 SV=1,54.32,2e-17,no
description,DNA-binding pseudobarrel domain; B3,B3 DNA binding domain;
DNA-binding pseudobarrel d,CUFF.24381.1
(252 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78770 weakly similar to UniRef100_A9SGA4 Cluster: Pre... 440 e-123
gnl|LJGI|TC73841 similar to UniRef100_A7P9A4 Cluster: Chromosome... 131 2e-30
gnl|LJGI|TC79583 similar to UniRef100_A7P9A4 Cluster: Chromosome... 80 7e-15
>gnl|LJGI|TC78770 weakly similar to UniRef100_A9SGA4 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(17%)
Length = 516
Score = 440 bits (222), Expect = e-123
Identities = 239/247 (96%)
Strand = Plus / Plus
Query: 6 gcgtgtaccaaatcccttcatcagagagtacttcaatgacatgcagcagaccataatgtt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gcgtgtaccaaatcccttcatcagagagtacttcaatgacatgcagcagaccataatgtt 154
Query: 66 acagtacgaaaagaaattgtggcctgtgaagttgatctgttatccnnnnnnnggttcagg 125
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 155 acagtacgaaaagaaattgtggcctgtgaagttgatctgttatcccaaaaaaggttcagg 214
Query: 126 caagttgtccaaaggttgggtcgaatttgctggaaaaagtaaattggtagttggagatgc 185
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 caagttgtcccaaggttgggtcgaatttgctggaaaaagtaaattggtagttggagatgc 274
Query: 186 ttgtgtgtttgagctcatcaataaggaagatccggtgcttgatgttcacattttcagagg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgtgtgtttgagctcatcaataaggaagatccggtgcttgatgttcacattttcagagg 334
Query: 246 tcactga 252
|||||||
Sbjct: 335 tcactga 341
>gnl|LJGI|TC73841 similar to UniRef100_A7P9A4 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 480
Score = 131 bits (66), Expect = 2e-30
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 126 caagttgtccaaaggttgggtcgaatttgctggaaaaagtaaattggtagttggagatgc 185
|||||||||||||||||||| | |||||| ||| ||||||||||||||| ||||||||
Sbjct: 200 caagttgtccaaaggttgggccctatttgcaggagaaagtaaattggtagctggagatgt 259
Query: 186 ttgtgtgtttgagctcatcaataaggaagatccggtgcttgatgttcacattttcagagg 245
|||||| |||||||||||||| || |||||| | ||| |||||||||| ||||||| |||
Sbjct: 260 ttgtgtctttgagctcatcaacaaagaagatgctgtgtttgatgttcatattttcaaagg 319
Query: 246 tcactg 251
||||||
Sbjct: 320 tcactg 325
>gnl|LJGI|TC79583 similar to UniRef100_A7P9A4 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 516
Score = 79.8 bits (40), Expect = 7e-15
Identities = 108/128 (84%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 126 caagttgtccaaaggttgggtcgaatttgct-ggaaaaagtaaattggtagt-tggagat 183
|||||||||| ||||||||| | |||||| ||| ||||||||||||||| |||||||
Sbjct: 245 caagttgtcctaaggttgggccctatttgccaggagaaagtaaattggtagcctggagat 304
Query: 184 gcttgtgtgtttgagctcatcaataaggaagatccggtgcttgatgttcacattttcaga 243
| |||||| |||||||||||| | | |||||| | ||| |||||||||| ||||||| |
Sbjct: 305 gtttgtgtctttgagctcatccaccaagaagatgctgtgtttgatgttcatattttcaaa 364
Query: 244 ggtcactg 251
||||||||
Sbjct: 365 ggtcactg 372