Miyakogusa Predicted Gene
- Lj0g3v0353889.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0353889.2 tr|D7KU36|D7KU36_ARALL DNA-directed RNA
polymerase OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,27.49,4e-18,seg,NULL; beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL,CUFF.24477.2
(2364 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59796 weakly similar to UniRef100_A7Q5G0 Cluster: DNA... 1929 0.0
>gnl|LJGI|TC59796 weakly similar to UniRef100_A7Q5G0 Cluster: DNA-directed RNA
polymerase; n=1; Vitis vinifera|Rep: DNA-directed RNA
polymerase - Vitis vinifera (Grape), partial (7%)
Length = 1597
Score = 1929 bits (973), Expect = 0.0
Identities = 985/989 (99%)
Strand = Plus / Plus
Query: 1376 aagaaggctcttccaagtccaatgcttggaagtcaaacatagagcaacgtagtgatgagg 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaaggctcttccaagtccaatgcttggaagtcaaacatagagcaacgtagtgatgagg 60
Query: 1436 attcttggacctctcagaaactgaaagctgatgttatccaggactcttccaagccaagct 1495
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcttggagctctcagaaactgaaagctgatgttatccaggactcttccaagccaagct 120
Query: 1496 cttggggagctaaacccaagtcgaatgactcctccaattggggaagaaataaagatgaaa 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttggggagctaaacccaagtcgaatgactcctccaattggggaagaaataaagatgaaa 180
Query: 1556 tacaggatgttgtgtctagaagagccgaagatgattcttggagctctaagaaacagctta 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaggatgttgtgtctagaagagccgaagatgattcttggagctctaagaaacagcttg 240
Query: 1616 gttctgatgctacccaagaagactcttccaagttcagcttttggggaggtaacaaagata 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttctgatgctacccaagaagactcttccaagttcagcttttggggaggtaacaaagata 300
Query: 1676 caacaaagccgaagtcaaatgattggtccagctggggtggaaatagagatggaatacagg 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caacaaagccgaagtcaaatgattggtccagctggggtggaaatagagatggaatacagg 360
Query: 1736 atggtgggtctaaaagagcccaagatgattcttggagctctcaaaaagatgttaccagag 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggtgggtctaaaagagcccaagatgattcttggagctctcaaaaagatgttaccagag 420
Query: 1796 aaagctcttctaaggttgatgcatggggtgcaaataatgaggcatcaaaccccaagtcaa 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagctcttctaaggttgatgcatggggtgcaaataatgaggcatcaaaccccaagtcaa 480
Query: 1856 atgattggtcagcctgggggaaaaataaagatggaacacaagatggtggttcagagagag 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgattggtcagcctgggggaaaaataaagatggaacacaagatggtggttcagagagag 540
Query: 1916 cccaagatgattcatcaagcttgggtaagtggaaagctgaatcacaagttgaagctgata 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cccaagatgattcatcaagcttgggtaagtggaaagctgaatcacaagttgaagctgata 600
Query: 1976 cggtgcaagaagactcttctaaatccaaagcctgggaacgtaattctgacaatgtgaagg 2035
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cggtgtaagaagactcttctaaatccaaagcctgggaacgtaattctgacaatgtgaagg 660
Query: 2036 ttggcaatagctcttggggaaaacccaaatttccagaaactcaagcttgggatccccaga 2095
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 661 ttggcaatagctcttggggaaaacccaaatttccagaaactcaagcttgggatctccaga 720
Query: 2096 aagagacaaatcaaggtgcaggttcacgtgggtgggactcacaaattgcttctgctaatt 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aagagacaaatcaaggtgcaggttcacgtgggtgggactcacaaattgcttctgctaatt 780
Query: 2156 ctgacagtgatagaaattttcaatggggaaagcaaggaagagaatcatttaagaaaagtc 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctgacagtgatagaaattttcaatggggaaagcaaggaagagaatcatttaagaaaagtc 840
Query: 2216 aaggttggggatcaaatgctggtgacatgaaaaataagaatcgtcctggcagagcacctg 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aaggttggggatcaaatgctggtgacatgaaaaataagaatcgtcctggcagagcacctg 900
Query: 2276 gaccaaggttggatatgtattcatctgaggaacaggatattctcaaggatattgaaccta 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaccaaggttggatatgtattcatctgaggaacaggatattctcaaggatattgaaccta 960
Query: 2336 ttgtccagtccatcagacgaataatgcaa 2364
|||||||||||||||||||||||||||||
Sbjct: 961 ttgtccagtccatcagacgaataatgcaa 989