Miyakogusa Predicted Gene

Lj0g3v0352289.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0352289.1 Non Chatacterized Hit- tr|C4J5A4|C4J5A4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,32.61,0.068,coiled-coil,NULL; seg,NULL,CUFF.24235.1
         (448 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67556 similar to UniRef100_P36212 Cluster: 50S riboso...   749   0.0  
gnl|LJGI|AV775607 similar to UniRef100_P24929 Cluster: 50S ribos...   424   e-118

>gnl|LJGI|TC67556 similar to UniRef100_P36212 Cluster: 50S ribosomal protein L12-3,
           chloroplast precursor; n=1; Arabidopsis thaliana|Rep:
           50S ribosomal protein L12-3, chloroplast precursor -
           Arabidopsis thaliana (Mouse-ear cress), partial (74%)
          Length = 764

 Score =  749 bits (378), Expect = 0.0
 Identities = 393/398 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcaaaaatctccaatgaattgagttatgaaacaggaatcaacaaaccacttttacaa 60
           ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 757 atgtccaaaatctccaatgaattgagttatgaaactggaatcaacaaacctcttttacaa 698

                                                                       
Query: 61  attgaactcaaactacatattattactacgaaattacacaaagagagtaaaagtgaggaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 697 attgaactcaaactacatattattactacgaaattacacaaagagagtaaaattgaggaa 638

                                                                       
Query: 121 aatcaaaacatggagaagagaagcgaaaacctaaacaatggcaactttggcaccagcttc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aatcaaaacattgagaagagaagcgaaaacctaaacaatggcaactttggcaccagcttc 578

                                                                       
Query: 181 ttcaagctgtttcttagcatcttcagcttcatccttagaaaccccttctttgaatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttcaagctgtttcttagcatcttcagcttcatccttagaaaccccttctttgaatttctt 518

                                                                       
Query: 241 cggcaacccttcaatcagctccttcgcctccttcaacgccaagctcgtcagcgctctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cggcaacccttcaatcagctccttcgcctccttcaacgccaagctcgtcagcgctctcac 458

                                                                       
Query: 301 cgccttaatcgcagcaatcctagcattactcggcacctcctgaatcaccacatcgaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cgccttaatcgcagcaatcctagcattactcggcacctcctgaatcaccacatcgaactc 398

                                                 
Query: 361 cgtctgctcctccaccaccgctacagcagcatcagccg 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cgtctgctcctccaccaccgctacagcagcatcagccg 360



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 395 gccgagctgctcctgtaggtagtcgacgagggtcttggcttgttccagtgtgag 448
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gccgagcttgtcctgtaggtagtcgacgagggtcttggcttgttccagtgtgag 257


>gnl|LJGI|AV775607 similar to UniRef100_P24929 Cluster: 50S ribosomal protein L12,
           chloroplast precursor; n=1; Nicotiana tabacum|Rep: 50S
           ribosomal protein L12, chloroplast precursor - Nicotiana
           tabacum (Common tobacco), partial (34%)
          Length = 416

 Score =  424 bits (214), Expect = e-118
 Identities = 332/366 (90%), Gaps = 4/366 (1%)
 Strand = Plus / Plus

                                                                       
Query: 37  ggaatcaacaaaccacttttacaaattgaactcaaactacatattattactacgaaatta 96
           ||||||| ||| || |||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct: 41  ggaatcaccaaccctcttttagaaatggaactcaaactacttattattactacgaaatta 100

                                                                       
Query: 97  cacaaagagagtaaaagtgaggaaaatcaaaacatggagaagagaagcgaaaacctaa-a 155
           |||||||||||||| |  |||||||||||||||||||| ||||||||||||| ||||  |
Sbjct: 101 cacaaagagagtaagatggaggaaaatcaaaacatggaaaagagaagcgaaaccctagga 160

                                                                       
Query: 156 caatggcaactttggcaccagcttctt-caagctgtttcttagcatcttcagcttcatcc 214
           ||| ||| |||| |||||||||||||| ||||||||  ||||||||||||||||||||||
Sbjct: 161 caagggcgacttgggcaccagcttcttgcaagctgtaacttagcatcttcagcttcatcc 220

                                                                       
Query: 215 ttagaaacccc-ttctttgaatttcttcggcaacccttcaatcagctcct-tcgcctcct 272
           ||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 221 ttacaaaccccgttctttgaattgcttcggcaacccttcaatcagctcctctcgcctcct 280

                                                                       
Query: 273 tcaacgccaagctcgtcagcgctctcaccgccttaatcgcagcaatcctagcattactcg 332
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 281 tcaaggccaagctcgtcagcgctctcaccgccttaatcgcagcaaccctagcattactcg 340

                                                                       
Query: 333 gcacctcctgaatcaccacatcgaactccgtctgctcctccaccaccgctacagcagcat 392
           || ||||| |||| |||||||||||||| ||| | ||||||||||||| || || |||||
Sbjct: 341 gcccctccggaataaccacatcgaactcggtcgggtcctccaccaccggtaaagaagcat 400

                 
Query: 393 cagccg 398
           ||||||
Sbjct: 401 cagccg 406