Miyakogusa Predicted Gene

Lj0g3v0352109.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0352109.1 tr|C7J0T0|C7J0T0_ORYSJ Os04g0376600 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os04g03766,57.3,3e-19,seg,NULL,CUFF.24566.1
         (558 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS355074 similar to UniRef100_A7R136 Cluster: Chromosom...   172   1e-42
gnl|LJGI|TC74862 similar to UniRef100_A7QYZ5 Cluster: Chromosome...   103   1e-21

>gnl|LJGI|FS355074 similar to UniRef100_A7R136 Cluster: Chromosome undetermined
           scaffold_336, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_336,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (24%)
          Length = 466

 Score =  172 bits (87), Expect = 1e-42
 Identities = 191/225 (84%), Gaps = 3/225 (1%)
 Strand = Plus / Minus

                                                                       
Query: 326 ctgtggcctatccatttgccttcattaaacccagtggtgcgcatggagatgtaactctga 385
           |||| ||||||||||||||||||||||||||||||||| |  |||||||||| |||||||
Sbjct: 466 ctgtagcctatccatttgccttcattaaacccagtggtactgatggagatgtcactctga 407

                                                                       
Query: 386 aggaaattaaccagcgcattcgaactccacctccttcaaagtcaaagcaaaacagtgaag 445
           ||||||| || ||||||||||    | ||||  |||||||  ||||||||| ||| ||||
Sbjct: 406 aggaaataaatcagcgcattcagtgttcaccgacttcaaaaccaaagcaaaccagggaag 347

                                                                       
Query: 446 atccatctgcttatcccaaatcagccttctcagggaagcctgtggttggtaaaacaaaaa 505
           |||||      || |||||||||||||| |||||||||||||| ||||| ||||  ||||
Sbjct: 346 atccaaaa---taccccaaatcagccttttcagggaagcctgtagttggaaaaatgaaaa 290

                                                        
Query: 506 ttcgcactgaaggagggaaaggaagcatcacaattatgagaacta 550
           ||| ||||||||| |||||||| |||||||| |||||||||||||
Sbjct: 289 ttcacactgaaggggggaaaggtagcatcactattatgagaacta 245


>gnl|LJGI|TC74862 similar to UniRef100_A7QYZ5 Cluster: Chromosome undetermined
           scaffold_260, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_260,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (20%)
          Length = 606

 Score =  103 bits (52), Expect = 1e-21
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                               
Query: 1   atgaaggatattttccctgaagtgtccccatgggtgtctggggcatcatcag 52
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atgaaggatattttccctgaagtgtccccatgggtgtctggggcatcatcag 587