Miyakogusa Predicted Gene
- Lj0g3v0351859.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0351859.1 Non Chatacterized Hit- tr|B9S7A9|B9S7A9_RICCO
Nucleic acid binding protein, putative OS=Ricinus
comm,48.45,0,zf-C2H2_4,NULL; zf-C2H2_jaz,Zinc finger, double-stranded
RNA binding; C2H2 and C2HC zinc fingers,NUL,CUFF.24188.1
(1386 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc fi... 127 2e-28
gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromoso... 127 2e-28
gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 117 2e-25
gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromos... 103 3e-21
gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 100 5e-20
gnl|LJGI|TC66141 similar to UniRef100_Q5UDB7 Cluster: INDETERMIN... 94 3e-18
gnl|LJGI|TC61639 similar to UniRef100_Q2HVE6 Cluster: Zinc finge... 88 2e-16
gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc fing... 78 2e-13
gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosom... 70 4e-11
gnl|LJGI|TC71214 similar to UniRef100_A7QBW4 Cluster: Chromosome... 64 2e-09
>gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (16%)
Length = 418
Score = 127 bits (64), Expect = 2e-28
Identities = 103/116 (88%)
Strand = Plus / Plus
Query: 229 aagcatggtgagaagaagtggaagtgtgaaaagtgccctaagaagtatgctgttcaatca 288
||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 15 aagcatggtgagaagaagtggaaatgtgaaaagtgctccaagaagtatgcagttcaatca 74
Query: 289 gattggaaagcacattccaagacttgtggcacaaaagagtatagatgtgactgtgg 344
|| |||||||| || ||||| || ||||| |||| ||| || ||||||||||||||
Sbjct: 75 gactggaaagctcactccaaaacctgtggtacaagagaatacagatgtgactgtgg 130
>gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 1231
Score = 127 bits (64), Expect = 2e-28
Identities = 184/224 (82%)
Strand = Plus / Plus
Query: 190 ctgggagatctcactgggattaagaagcacttctctcggaagcatggtgagaagaagtgg 249
||||| || |||||||| |||||||||||||||| | ||||| || ||||| || |||
Sbjct: 700 ctgggcgacctcactggcattaagaagcacttctgcagaaagcacggcgagaaaaaatgg 759
Query: 250 aagtgtgaaaagtgccctaagaagtatgctgttcaatcagattggaaagcacattccaag 309
|| ||||| |||||| | |||||||| ||||||||||| || |||| |||||| |||||
Sbjct: 760 aaatgtgacaagtgctccaagaagtacgctgttcaatctgactggagagcacactccaaa 819
Query: 310 acttgtggcacaaaagagtatagatgtgactgtggcactctcttctccagaagagacagt 369
| |||||||| || || |||| ||||||||||| || |||| ||||||||||| |||
Sbjct: 820 atatgtggcacgaaggaatataagtgtgactgtggaaccatcttttccagaagagatagt 879
Query: 370 ttcatcacccacagggccttctgtgatgcaccggctcaagagaa 413
|||||||||||||| || ||||| || |||| | || |||||||
Sbjct: 880 ttcatcacccacagagctttctgcgacgcactgtctgaagagaa 923
>gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 781
Score = 117 bits (59), Expect = 2e-25
Identities = 203/251 (80%)
Strand = Plus / Plus
Query: 148 tgtcctgaacccacttgtgtacaccatgacccttcaagggctctgggagatctcactggg 207
||||||||||| || |||| || || || ||||| || ||| |||| |||||||| |||
Sbjct: 341 tgtcctgaaccgacgtgtgctcatcacgatccttctagagctttgggtgatctcacgggg 400
Query: 208 attaagaagcacttctctcggaagcatggtgagaagaagtggaagtgtgaaaagtgccct 267
||||||||||| |||| | || ||||| |||||||||||||| ||||| |||||| ||
Sbjct: 401 attaagaagcatttctgcagaaaacatggcgagaagaagtggaaatgtgacaagtgctct 460
Query: 268 aagaagtatgctgttcaatcagattggaaagcacattccaagacttgtggcacaaaagag 327
||||| ||||| |||||||| ||||||||||| || ||||||| ||| || || | ||||
Sbjct: 461 aagaaatatgcggttcaatcggattggaaagctcactccaagatttgcggtaccagagag 520
Query: 328 tatagatgtgactgtggcactctcttctccagaagagacagtttcatcacccacagggcc 387
|||| ||| || ||||| ||| | || || || || || || |||||||| || |||||
Sbjct: 521 tataaatgcgattgtggaactttgttttcaaggagggatagcttcatcacgcatagggcg 580
Query: 388 ttctgtgatgc 398
|| ||||||||
Sbjct: 581 ttttgtgatgc 591
>gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 589
Score = 103 bits (52), Expect = 3e-21
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 232 catggtgagaagaagtggaagtgtgaaaagtgccctaagaagtatgctgttcaatcagat 291
|||||||||||||||||||||||||| |||||| | ||||| || |||||||| || |||
Sbjct: 368 catggtgagaagaagtggaagtgtgagaagtgctccaagaaatacgctgttcattccgat 427
Query: 292 tggaaagcacattccaagacttgtggcacaaaagagtatagatgtgactgtggcactctc 351
||||| || ||| |||||| |||||| || | |||||| | |||||||||||||| ||
Sbjct: 428 tggaaggcccatgccaagatttgtgggactagagagtacaagtgtgactgtggcacactt 487
Query: 352 ttctccag 359
||||||||
Sbjct: 488 ttctccag 495
>gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 951
Score = 99.6 bits (50), Expect = 5e-20
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 154 gaacccacttgtgtacaccatgacccttcaagggctctgggagatctcactgggattaag 213
||||| || ||||| |||||||||||||| | || |||| |||||||| || |||||
Sbjct: 410 gaaccaacgtgtgtccaccatgacccttctcgagcgttgggtgatctcaccggaattaaa 469
Query: 214 aagcacttctctcggaagcatggtgagaagaagtggaagtgtgaaaagtgccctaagaag 273
|||||||||| | ||||| ||||||||||||||||| || || || ||| | |||||
Sbjct: 470 aagcacttctgcagaaagcacggtgagaagaagtggaaatgcgagaaatgctccaagaaa 529
Query: 274 tatgctgttcaatcagattggaaagcacattccaagacttgtggcacaaaagagtataga 333
||||| |||||||| ||||||||||| || |||||| ||| || || | |||||||| |
Sbjct: 530 tatgcagttcaatctgattggaaagctcactccaaggtttgcggtaccagagagtataaa 589
Query: 334 tgtgactgtggcac 347
|||||||| |||||
Sbjct: 590 tgtgactgcggcac 603
>gnl|LJGI|TC66141 similar to UniRef100_Q5UDB7 Cluster: INDETERMINATE-related protein
7; n=1; Zea mays|Rep: INDETERMINATE-related protein 7 -
Zea mays (Maize), partial (9%)
Length = 725
Score = 93.7 bits (47), Expect = 3e-18
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 atggcaacaaacaggtttatatgtgaggtgtgcaacaaaggattccaaagagagcaaaa 59
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 663 atggcaacaaacaggttcatatgtgaggtgtgcaacaaagggttccaaagggagcaaaa 721
>gnl|LJGI|TC61639 similar to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (17%)
Length = 805
Score = 87.7 bits (44), Expect = 2e-16
Identities = 92/108 (85%)
Strand = Plus / Plus
Query: 1 atggcaacaaacaggtttatatgtgaggtgtgcaacaaaggattccaaagagagcaaaat 60
||||||||||||||||| |||||||| | ||||||||||||||||||||||| || |||
Sbjct: 698 atggcaacaaacaggttcttatgtgagatctgcaacaaaggattccaaagagatcagaat 757
Query: 61 ttgcagctccacagaagaggacacaacttgccttggaagctaaagcag 108
| ||||| || |||||||| ||||| || || |||||| | ||||||
Sbjct: 758 cttcagcttcatagaagagggcacaatttaccatggaagttgaagcag 805
>gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc finger, C2H2 type family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: Zinc finger, C2H2 type family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(23%)
Length = 491
Score = 77.8 bits (39), Expect = 2e-13
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 229 aagcatggtgagaagaagtggaagtgtgaaaagtgccctaagaagtatgctgttcaatca 288
||||| ||||||||||||||||||||||| |||||| | ||||| || || || | ||||
Sbjct: 240 aagcacggtgagaagaagtggaagtgtgagaagtgctccaagaaatacgcagtcccatca 181
Query: 289 gattggaaagcacattccaagacttgtggcacaaaagagtatagatgtgactgtggcact 348
||||||||||| || || | || || ||||| | ||||| | ||||||||||||||
Sbjct: 180 gattggaaagctcacacccaaacatgcggcaccagggagtacaagtgtgactgtggcacc 121
Query: 349 ctcttctccag 359
|||||||||||
Sbjct: 120 ctcttctccag 110
Score = 54.0 bits (27), Expect = 2e-06
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 31 tgcaacaaaggattccaaagagagcaaaatttgcagctccacagaagaggacacaacttg 90
|||||| |||| ||||| ||||| || ||| | ||||||||||||||||| |||||| |
Sbjct: 435 tgcaactaaggcttccagagagaccagaatctccagctccacagaagaggccacaacctc 376
Query: 91 ccttggaagct 101
|| ||||||||
Sbjct: 375 ccatggaagct 365
>gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 618
Score = 69.9 bits (35), Expect = 4e-11
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 328 tatagatgtgactgtggcactctcttctccagaagagacagtttcatcacccacagggcc 387
||||||||||| |||||||| |||||||| || | || ||||||||||| || ||||||
Sbjct: 293 tatagatgtgattgtggcaccctcttctcaaggcgtgatagtttcatcactcatagggcc 352
Query: 388 ttctgtgatgc 398
|||||||||||
Sbjct: 353 ttctgtgatgc 363
>gnl|LJGI|TC71214 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 974
Score = 63.9 bits (32), Expect = 2e-09
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 968 ctcctcacctgtcagcaacagcaatgcttcagaaagctgctcaaatgg 1015
|||||||| ||||||| || ||| ||||||||||||||||||||||||
Sbjct: 215 ctcctcacatgtcagccactgcattgcttcagaaagctgctcaaatgg 262