Miyakogusa Predicted Gene

Lj0g3v0351649.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0351649.1 Non Chatacterized Hit- tr|D7KPV0|D7KPV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,52.94,9e-19,DUF2040,Domain of unknown function DUF2040; INNER
MEMBRANE PROTEIN,NULL; coiled-coil,NULL; seg,NULL,CUFF.24166.1
         (517 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71599 similar to UniRef100_Q8S8I5 Cluster: Expressed ...   914   0.0  

>gnl|LJGI|TC71599 similar to UniRef100_Q8S8I5 Cluster: Expressed protein; n=1;
           Arabidopsis thaliana|Rep: Expressed protein -
           Arabidopsis thaliana (Mouse-ear cress), partial (47%)
          Length = 1122

 Score =  914 bits (461), Expect = 0.0
 Identities = 503/517 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaagagaaagttgcaaaaccactgatacaagatcgtgaagagagaaagccaaagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgaaagagaaagttgcaaaaccactgatacaagatcgtgaagagagaaagccaaagtat 361

                                                                       
Query: 61  atccaaaatctgattaaaaaagcaaaagagcgagagcagtatcgcgagattgtgtacgag 120
           |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 362 atccaaaatctgatgaaaaaagccaaggagcgagagcagtatcgcgagattgtgtacgag 421

                                                                       
Query: 121 aaaaagattgccatggagagagacaaagatgatcatctctatgctgacaaagacaaatat 180
           |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 422 aaaaaggttgccaaggagagagacaaagatgatcatctctatgctgacaaagacaaattt 481

                                                                       
Query: 181 gttactgaagcatatagaaggaagcttgctgaacgagagagacagatggagctagaaaga 240
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 482 gttactgaagcgtatagaaggaagcttgctgaacgggagagacagatggagctagaaaga 541

                                                                       
Query: 241 atccgtgaacttcaagaggagagagatgatgttacaaagaagaaagactttttgcttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atccgtgaacttcaagaggagagagatgatgttacaaagaagaaagactttttgcttgat 601

                                                                       
Query: 301 ttttattcaaaccttgataaaaatgttgcttatggagcaaaagatgctcaagggaggaaa 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttttattcaaaccttgatagaaatgttgcttatggagcaaaagatgctcaagggaggaaa 661

                                                                       
Query: 361 cgtgacaaccaggctgaacatagagttccagagacacatgagggagtgaaccctgatgca 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 662 cgtgacaaccaggctgaacatagagttccagagacacatgagggggtgaaccctgatgca 721

                                                                       
Query: 421 tcagacaggcatcatcagcatggtgatgcatcggatgaaaaacaacattcattgggtaac 480
           ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 722 tcagacaggcatcaggagcatggtgatgcatcggatgaaagacaacattcattgggtaac 781

                                                
Query: 481 tcaagtccaccagtggagtcttccaaggaaaaaattg 517
           ||||||||||||||||||| |||||||||||||||||
Sbjct: 782 tcaagtccaccagtggagttttccaaggaaaaaattg 818