Miyakogusa Predicted Gene
- Lj0g3v0351219.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0351219.1 Non Chatacterized Hit- tr|I3SWC5|I3SWC5_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2 SV,28.38,3e-18,no
description,Tetratricopeptide-like helical; PPR,Pentatricopeptide
repeat; SUBFAMILY NOT NAMED,NUL,CUFF.24134.1
(1605 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Ch... 789 0.0
gnl|LJGI|AV429083 weakly similar to UniRef100_A7QQ24 Cluster: Ch... 587 e-167
gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chr... 121 1e-26
gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Ch... 101 1e-20
gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Ch... 100 5e-20
gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Ch... 74 3e-12
gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 68 2e-10
gnl|LJGI|TC77080 weakly similar to UniRef100_A7QVP2 Cluster: Chr... 64 3e-09
gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chr... 64 3e-09
gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Ch... 62 1e-08
gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Ch... 60 5e-08
gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Te... 60 5e-08
>gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 576
Score = 789 bits (398), Expect = 0.0
Identities = 508/547 (92%)
Strand = Plus / Minus
Query: 1055 aaatgcatcacaaagagcttattcctaatacggtaatatataattctcttattgatggtt 1114
||||||||| || ||||||||||||||||||||||| | | |||||||||||| ||||||
Sbjct: 576 aaatgcatcccagagagcttattcctaatacggtaaaaaaaaattctcttattaatggtt 517
Query: 1115 tgtgcaaggccagacgaatctcctgtgctgttgagcttgttgatgtgatgcatgatacag 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 516 tgtgcaaggccagacgaatctcctgtgctgttgagcttgttgatgtgatgcatgaaacag 457
Query: 1175 gtcacccagctgatttaatcaccaacaattccttattcgatggtttatgcaaaaaccatc 1234
||| ||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 456 gtcccccggctgatttaatcaccaccaattccttattcgatggtttatgcaaacaccatc 397
Query: 1235 ttcttgacaaggcaactgcattgttcatgaaaattaaagatcacataattcagccaaata 1294
||||||| ||||||| |||||| ||||||||| ||||||||| || ||||||||||||||
Sbjct: 396 ttcttgataaggcaattgcattattcatgaaagttaaagatcccaaaattcagccaaata 337
Query: 1295 tacacacctacacagtgataattgatggactatgcaaagttggaaggcttaagaatgcac 1354
||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 336 tacccccctacccagtgataattgatggactatgcaaagttggaaggcttaagattgccc 277
Query: 1355 aagagatttttcaggttcttctgagtgaaggctacaatttaaatgccatgatgtatactg 1414
|||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||
Sbjct: 276 aagagatttttcaggttcttttgagcgaaggctacaatttaaatgtcatgacgtatactg 217
Query: 1415 ttatgatcaatgggtattgtaaagaaggtttactagatgaggctcaggccttgctgtcaa 1474
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 216 ttatgatcaatgggtattgtaaagaaggtttacttgatgaggctcaggccctgctgtcaa 157
Query: 1475 aaatggaagacaatggttgcattcctaatgctgtgaattttcaatcaataatttgtgctc 1534
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 156 aaatggaagacaatggttgcattcctaatgctgtgaattttcaaacaataatttgtgctc 97
Query: 1535 tctttcnnnnnnntgagaatgagaaggcagagagacttgttcgtgaaatgattgctagag 1594
||||| ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 96 tctttgaaaaaaatgagaatgataaggcagagagactttttcgtgaaatgattgctagag 37
Query: 1595 atctatt 1601
|||||||
Sbjct: 36 atctatt 30
>gnl|LJGI|AV429083 weakly similar to UniRef100_A7QQ24 Cluster: Chromosome chr2
scaffold_140, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_140, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 300
Score = 587 bits (296), Expect = e-167
Identities = 299/300 (99%)
Strand = Plus / Plus
Query: 725 gtttgttcaaggaaatggaattgaaaaacaacatcaaaccagatgtttctacctttaata 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttgttcaaggaaatggaattgaaaaacaacatcaaaccagatgtttctacctttaata 60
Query: 785 tattggttgatgctttatgtaagaaaggaaaggtgaaacaagctaagaatgtgttggctg 844
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 tattggttgatgctttatgtaagaaaggaaaggtgaaacatgctaagaatgtgttggctg 120
Query: 845 tgatgataaaacaaggtgtggcgccggacttagttacttatagtaccttgttggatgggt 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatgataaaacaaggtgtggcgccggacttagttacttatagtaccttgttggatgggt 180
Query: 905 attgtctaactaaggacatgtacaagggaaaatatgtactcaacgctatgggtcgagtgg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgtctaactaaggacatgtacaagggaaaatatgtactcaacgctatgggtcgagtgg 240
Query: 965 gagtgactcctaatgttgatagctacaatattgtgattaatgggttctgtaaggttaaat 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagtgactcctaatgttgatagctacaatattgtgattaatgggttctgtaaggttaaat 300
>gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1411
Score = 121 bits (61), Expect = 1e-26
Identities = 157/189 (83%)
Strand = Plus / Plus
Query: 1318 gatggactatgcaaagttggaaggcttaagaatgcacaagagatttttcaggttcttctg 1377
|||||||| ||||||| ||||| ||||||||||||||||| ||||||||| |||| |
Sbjct: 38 gatggactgtgcaaagaaggaagacttaagaatgcacaagatgtttttcaggatctttta 97
Query: 1378 agtgaaggctacaatttaaatgccatgatgtatactgttatgatcaatgggtattgtaaa 1437
| | ||||||| || ||| || | ||| |||||| |||||||||||||| |||||||
Sbjct: 98 actaaaggctatcatgtaactgtcccgatatatactattatgatcaatgggctttgtaaa 157
Query: 1438 gaaggtttactagatgaggctcaggccttgctgtcaaaaatggaagacaatggttgcatt 1497
|| ||||| | ||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 158 gagggtttgtttgatgaagcattggccttgctgtctaaaatggaagacaatggttgcatg 217
Query: 1498 cctaatgct 1506
|||||||||
Sbjct: 218 cctaatgct 226
>gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 785
Score = 101 bits (51), Expect = 1e-20
Identities = 213/267 (79%)
Strand = Plus / Plus
Query: 267 cttgatcaattgttactgccatttgggtcgaatcagtttcgcattctctgttttaggcaa 326
|||||||||||||| |||| | |||||| |||| |||||| |||||||| || |||||
Sbjct: 355 cttgatcaattgtttctgcaacatgggtcaaatccctttcgccttctctgtattgggcaa 414
Query: 327 aattctcaaaaggggttatcaccctggttccataacgttcactacactcatcaaaagtct 386
|||||||| ||||||||||| || | | | |||| || ||||||||||| ||| ||||
Sbjct: 415 gattctcaagaggggttatcagccagatactgtaaccttgactacactcatgaaaggtct 474
Query: 387 atgtcttaatggcgagattcggaaagcgttgaattttcatgatgatgtggtagctaaggg 446
||||||| ||| || | |||||| ||| | |||||||| |||||||||| | ||
Sbjct: 475 ctgtcttagtggtcaggtcaagaaagctttgcaatttcatgaccatgtggtagcacatgg 534
Query: 447 gtttcagttagaccctgttggatatgggacattgatcaatgtgttatgtaaagtgggaga 506
|||||| | ||| ||| | |||||||| |||||||||| ||||||||| | |||||
Sbjct: 535 atttcagctcaaccaagttagttatgggaccttgatcaatggattatgtaaaattggaga 594
Query: 507 aacaaaggctgccttgaagttgctgag 533
||||| ||||||||| ||||||||||
Sbjct: 595 aacaagtgctgccttgcagttgctgag 621
>gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 537
Score = 99.6 bits (50), Expect = 5e-20
Identities = 315/404 (77%), Gaps = 12/404 (2%)
Strand = Plus / Plus
Query: 469 tatgggacattgatcaatgtgttatgtaaagtgggagaaacaaaggctgccttgaagttg 528
|||||||| |||||||||| ||| |||||| |||| ||||||| |||||| || |||
Sbjct: 79 tatgggaccttgatcaatgggttgtgtaaaatgggtgaaacaagagctgccctgcgattg 138
Query: 529 ctgagacaagttgaagggaa---------gcctgatttgctaatgtatagtacaatcatt 579
|||||||| |||||||||| ||||||| || | ||||| || |||||||||
Sbjct: 139 ctgagacagattgaagggaaattagttcagcctgatgtggtcatgtacagcacaatcatt 198
Query: 580 gatagcctatgcaaagataaactcgtgacggatgcatttggtttatatcatgaaatgggt 639
|||||||| |||||||||||||| || | ||||| | | ||||||| |||||||
Sbjct: 199 gatagcctctgcaaagataaacttgtaagtgatgcctgcgatttatattcggaaatggta 258
Query: 640 gtcgagagaatttctccggatcttttcacttacaatgctctaatcggcggattgtgtgtc 699
|| ||||||||||||| | || |||||| |||||||||||| || || || |
Sbjct: 259 ctcaagagaatttctcctactgttgtcactttcaatgctctaatttatggcttttgcatt 318
Query: 700 gcgggaaaatttaagaaagctgttggtttgttcaaggaaatggaattgaaaaacaacatc 759
| ||| |||| || |||| ||||||||| | || ||||||| |||||||||| ||
Sbjct: 319 gtgggtcaattgaaagaagcagttggtttgctaaatgaaatggtgttgaaaaaca---tc 375
Query: 760 aaaccagatgtttctacctttaatatattggttgatgctttatgtaagaaaggaaaggtg 819
|| ||| |||| ||| |||||||| ||||||||| ||||||||| |||||||||||
Sbjct: 376 aacccaattgttaatacttttaatattctggttgatgggttatgtaaggaaggaaaggtg 435
Query: 820 aaacaagctaagaatgtgttggctgtgatgataaaacaaggtgt 863
||| ||||||| |||||||| ||||||||||| ||| |||||||
Sbjct: 436 aaagaagctaaaaatgtgttagctgtgatgatgaaagaaggtgt 479
>gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined
scaffold_1129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1129,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 688
Score = 73.8 bits (37), Expect = 3e-12
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 1150 cttgttgatgtgatgcatgatacaggtcacccagctgatttaatcaccaacaattcctta 1209
|||||||||| ||||||| || |||||| ||| ||||| ||||||| ||||||| |||
Sbjct: 607 cttgttgatgagatgcattgtagaggtcaaccacctgatgtaatcacatacaattcttta 548
Query: 1210 ttcgatggtttatgcaaaaaccatcttcttgacaaggcaactgcattgttcatgaaaatt 1269
|| |||| ||||||||||| ||||| | |||||| ||||| | | ||| ||| ||||||
Sbjct: 547 ttggatgctttatgcaaaagccatcatgttgacagggcaatttctttgatcaagaaaatg 488
Query: 1270 aaaga 1274
|||||
Sbjct: 487 aaaga 483
Score = 61.9 bits (31), Expect = 1e-08
Identities = 175/223 (78%)
Strand = Plus / Minus
Query: 1318 gatggactatgcaaagttggaaggcttaagaatgcacaagagatttttcaggttcttctg 1377
|||||||||||||||| || || || |||||||||||||| ||||||||| |||| |
Sbjct: 439 gatggactatgcaaagcaggcagagttgagaatgcacaagaggtttttcaggatctttta 380
Query: 1378 agtgaaggctacaatttaaatgccatgatgtatactgttatgatcaatgggtattgtaaa 1437
| | |||||||||||||| ||| | |||||| ||||||| |||||| |||||||
Sbjct: 379 attaaaggctacaatttagatgtacggtcgtatacaattatgattaatgggctttgtaaa 320
Query: 1438 gaaggtttactagatgaggctcaggccttgctgtcaaaaatggaagacaatggttgcatt 1497
|| || || | ||||| || | | || |||||||||||||| |||| ||||||||
Sbjct: 319 gagggcttgtttgatgaagcattgacactgatgtcaaaaatggaaaacaacggttgcatc 260
Query: 1498 cctaatgctgtgaattttcaatcaataatttgtgctctctttc 1540
||||| ||||| | || | || ||||||| ||||||||||||
Sbjct: 259 cctaacgctgtaacttatgaaataataattcgtgctctctttc 217
>gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (9%)
Length = 527
Score = 67.9 bits (34), Expect = 2e-10
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1552 aatgagaaggcagagagacttgttcgtgaaatgattgctagagatctatt 1601
||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 342 aatgataaggcagagaagcttcttcgtgaaatgattgctagagatctatt 293
>gnl|LJGI|TC77080 weakly similar to UniRef100_A7QVP2 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (19%)
Length = 898
Score = 63.9 bits (32), Expect = 3e-09
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 621 tttatatcatgaaatgggtgtcgagagaatttctccggatcttttcacttacaatgctct 680
||||||| |||||||| | || ||||||||||||| ||| |||||||||||||| ||||
Sbjct: 571 tttatataatgaaatgcttctcaagagaatttctccagatgttttcacttacaatactct 630
Query: 681 aatc 684
||||
Sbjct: 631 aatc 634
Score = 58.0 bits (29), Expect = 2e-07
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 754 aacatcaaaccagatgtttctacctttaatatattggttgatgctttatgtaagaaagga 813
|||||||||||||||||||| || ||| || |||| || |||| || || ||| || ||
Sbjct: 701 aacatcaaaccagatgtttcaacatttgatccattgattcatgccttgtgcaaggaacga 760
Query: 814 aaggtgaaacaagctaa 830
|||||||||||||||||
Sbjct: 761 aaggtgaaacaagctaa 777
Score = 54.0 bits (27), Expect = 3e-06
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 310 ttctctgttttaggcaaaattctcaaaaggggttatcaccctggttccataacgttcact 369
|||||||| |||||||||||||||| |||| |||||| |||| ||| | | || |||
Sbjct: 245 ttctctgtactaggcaaaattctcaagagggcttatcagcctgacaccacagccttgact 304
Query: 370 acactcatcaaaagtctatgtcttaatggcgagat 404
||||| || || |||| |||||||||||||||||
Sbjct: 305 acacttatgaagggtctctgtcttaatggcgagat 339
>gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (14%)
Length = 833
Score = 63.9 bits (32), Expect = 3e-09
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 142 cccatcatcaaattcaacaagattttagcttcccttgcaaagaagaagcagtattccaat 201
||||||||| ||||||||||||||||| ||||||| | |||| |||||| || |||| |
Sbjct: 481 cccatcatcgaattcaacaagattttaacttccctcgtgaagatgaagcattactccact 540
Query: 202 gtaatttcactttctcaacaaatg 225
|| || || |||||||| ||||||
Sbjct: 541 gtcatatccctttctcatcaaatg 564
>gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 802
Score = 61.9 bits (31), Expect = 1e-08
Identities = 103/127 (81%)
Strand = Plus / Plus
Query: 267 cttgatcaattgttactgccatttgggtcgaatcagtttcgcattctctgttttaggcaa 326
||||||||||||||||||| || | |||||||||| | ||||| ||||| || | |||
Sbjct: 260 cttgatcaattgttactgcaatctaggtcgaatcacctctgcattttctgtattggccaa 319
Query: 327 aattctcaaaaggggttatcaccctggttccataacgttcactacactcatcaaaagtct 386
|||||||| || |||| ||| |||| | |||| || |||||||| || |||||| ||||
Sbjct: 320 cattctcaagagaggttttcagcctgataccatcaccttcactactcttatcaaaggtct 379
Query: 387 atgtctt 393
||||||
Sbjct: 380 ctgtctt 386
>gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 766
Score = 60.0 bits (30), Expect = 5e-08
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 574 atcattgatagcctatgcaaagataaactcgtgacggatgcatttggtttatatcatgaa 633
|||||||||||| | |||||||||||||| || | ||||| ||| ||||||| ||||
Sbjct: 643 atcattgatagcttgtgcaaagataaacttgttagtgatgcgtttaatttatattctgaa 702
Query: 634 atgggtgtcgagagaatttctccggatcttttcacttacaatgctctaat 683
|||| || | ||||| ||| || ||| ||||||||||||||||| ||||
Sbjct: 703 atggttgccaagagagttttacctgatgttttcacttacaatgctttaat 752
>gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (12%)
Length = 528
Score = 60.0 bits (30), Expect = 5e-08
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1315 attgatggactatgcaaagttggaaggcttaagaatgcacaagagatttttcaggttctt 1374
|||||||||||||||||| |||||| | ||| ||||||||||| ||||||||| ||||
Sbjct: 401 attgatggactatgcaaaagtggaagagtaaaggatgcacaagagctttttcaggatctt 342
Query: 1375 ctgagtgaaggcta 1388
||| | |||||||
Sbjct: 341 ttgattaaaggcta 328