Miyakogusa Predicted Gene

Lj0g3v0347529.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0347529.1 tr|G7L8V5|G7L8V5_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g088810 PE=4
SV=1,44.17,5e-18,seg,NULL; DUF223,Domain of unknown function
DUF223,CUFF.23853.1
         (441 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC58860 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribo...    86   2e-16

>gnl|LJGI|TC58860 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribonucleoprotein
           complex subunit 2; n=2; Oryza sativa|Rep: H/ACA
           ribonucleoprotein complex subunit 2 - Oryza sativa
           subsp. indica (Rice), partial (29%)
          Length = 1269

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 379 tgtaatacgacgtcgtttctcaatttaggtttctttctcatcctctttcatcaaccctag 438
           |||||||| ||||||||| ||| || |||||||||||||||||||| |||||||||||||
Sbjct: 313 tgtaatactacgtcgtttttcagttgaggtttctttctcatcctctctcatcaaccctag 372

              
Query: 439 atc 441
           |||
Sbjct: 373 atc 375