Miyakogusa Predicted Gene
- Lj0g3v0346859.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0346859.1 tr|B9HDE1|B9HDE1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_763241 PE=4
SV=1,41.11,0.000001,SUBFAMILY NOT NAMED,NULL; SERINE/THREONINE-PROTEIN
KINASE RIO,NULL; zinc finger,Zinc finger, C2H2-li,CUFF.23808.1
(1575 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc fi... 125 9e-28
gnl|LJGI|TC61639 similar to UniRef100_Q2HVE6 Cluster: Zinc finge... 119 6e-26
gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromos... 107 2e-22
gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 105 8e-22
gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc fing... 98 2e-19
gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromoso... 94 3e-18
gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 86 8e-16
gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosom... 76 7e-13
gnl|LJGI|BW623067 homologue to UniRef100_A7PUY6 Cluster: Chromos... 70 5e-11
gnl|LJGI|TC66141 similar to UniRef100_Q5UDB7 Cluster: INDETERMIN... 58 2e-07
>gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (16%)
Length = 418
Score = 125 bits (63), Expect = 9e-28
Identities = 160/191 (83%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 437 agcactttttcaggaagcatggggagaagaaatggaagtgtgagaagtgttccaagcgtt 496
||||||||| ||| |||||||| |||||||| ||||| ||||| ||||| |||||| |
Sbjct: 1 agcacttttccagaaagcatggtgagaagaagtggaaatgtgaaaagtgctccaagaagt 60
Query: 497 atgcagttcaatcagattggaaagcccactccaaagtttgtggcaccagagagtatagat 556
|||||||||||||||| |||||||| ||||||||| ||||| || ||||| || ||||
Sbjct: 61 atgcagttcaatcagactggaaagctcactccaaaacctgtggtacaagagaatacagat 120
Query: 557 gtgactgtggaaccctcttctccaggagggacagttttatcactcacagagccttctgtg 616
||||||||||| || | | ||||||||||| ||| || || ||||||||||||||||
Sbjct: 121 gtgactgtggaggccgc-tgggcaggagggacaatttcataacccacagagccttctgtg 179
Query: 617 atgctttagca 627
|||| ||||||
Sbjct: 180 atgcattagca 190
>gnl|LJGI|TC61639 similar to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (17%)
Length = 805
Score = 119 bits (60), Expect = 6e-26
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 140 aaccacaacccaagaggaagagaagccttccaggccacccagatcctgaggctgaagtga 199
|||||| || |||||| ||||||| ||| || ||| ||||||| || || ||||||||
Sbjct: 615 aaccaccactcaagagaaagagaaacctccctggcaacccagacccagaagctgaagttg 674
Query: 200 tggccttgagtccccagacactcatggcaacgaacaggttcatttgtgagatttgcaaca 259
||||| || ||| || | || |||||||| ||||||||| | |||||||| |||||||
Sbjct: 675 tggccatgtctccaaagtctcttatggcaacaaacaggttcttatgtgagatctgcaaca 734
Query: 260 aagggtttagaagagatcagaatctgcagcttcatagaagagggcataatttgccatgga 319
|||| || ||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct: 735 aaggattccaaagagatcagaatcttcagcttcatagaagagggcacaatttaccatgga 794
Query: 320 agctgaag 327
|| |||||
Sbjct: 795 agttgaag 802
>gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 589
Score = 107 bits (54), Expect = 2e-22
Identities = 168/206 (81%)
Strand = Plus / Plus
Query: 412 cttggagacttaactggaatcaagaagcactttttcaggaagcatggggagaagaaatgg 471
||||||||||| || ||||||||||| ||||| ||| || ||||| |||||||| |||
Sbjct: 326 cttggagacttgacaggaatcaagaaacacttcagcagaaaacatggtgagaagaagtgg 385
Query: 472 aagtgtgagaagtgttccaagcgttatgcagttcaatcagattggaaagcccactccaaa 531
|||||||||||||| |||||| || || ||||| || |||||||| ||||| ||||
Sbjct: 386 aagtgtgagaagtgctccaagaaatacgctgttcattccgattggaaggcccatgccaag 445
Query: 532 gtttgtggcaccagagagtatagatgtgactgtggaaccctcttctccaggagggacagt 591
||||||| || |||||||| | ||||||||||| || || |||||||||| ||||||
Sbjct: 446 atttgtgggactagagagtacaagtgtgactgtggcacacttttctccaggaaggacagc 505
Query: 592 tttatcactcacagagccttctgtga 617
|| || ||||| ||||| || |||||
Sbjct: 506 ttcataactcatagagctttttgtga 531
>gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 951
Score = 105 bits (53), Expect = 8e-22
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 427 ggaatcaagaagcactttttcaggaagcatggggagaagaaatggaagtgtgagaagtgt 486
||||| || |||||||| | ||| ||||| || |||||||| ||||| || ||||| ||
Sbjct: 461 ggaattaaaaagcacttctgcagaaagcacggtgagaagaagtggaaatgcgagaaatgc 520
Query: 487 tccaagcgttatgcagttcaatcagattggaaagcccactccaaagtttgtggcaccaga 546
|||||| |||||||||||||| ||||||||||| |||||||| ||||| || ||||||
Sbjct: 521 tccaagaaatatgcagttcaatctgattggaaagctcactccaaggtttgcggtaccaga 580
Query: 547 gagtatagatgtgactg 563
||||||| |||||||||
Sbjct: 581 gagtataaatgtgactg 597
>gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc finger, C2H2 type family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: Zinc finger, C2H2 type family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(23%)
Length = 491
Score = 97.6 bits (49), Expect = 2e-19
Identities = 127/153 (83%)
Strand = Plus / Minus
Query: 430 atcaagaagcactttttcaggaagcatggggagaagaaatggaagtgtgagaagtgttcc 489
|||||||||||||| ||| ||||| || |||||||| ||||||||||||||||| |||
Sbjct: 261 atcaagaagcacttcagcagaaagcacggtgagaagaagtggaagtgtgagaagtgctcc 202
Query: 490 aagcgttatgcagttcaatcagattggaaagcccactccaaagtttgtggcaccagagag 549
||| || ||||| | ||||||||||||||| ||| || || || |||||||| |||
Sbjct: 201 aagaaatacgcagtcccatcagattggaaagctcacacccaaacatgcggcaccagggag 142
Query: 550 tatagatgtgactgtggaaccctcttctccagg 582
|| | ||||||||||| |||||||||||||||
Sbjct: 141 tacaagtgtgactgtggcaccctcttctccagg 109
>gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 1231
Score = 93.7 bits (47), Expect = 3e-18
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 424 actggaatcaagaagcactttttcaggaagcatggggagaagaaatggaagtgtgagaag 483
||||| || ||||||||||| | ||| ||||| || ||||| |||||||| ||||| |||
Sbjct: 712 actggcattaagaagcacttctgcagaaagcacggcgagaaaaaatggaaatgtgacaag 771
Query: 484 tgttccaagcgttatgcagttcaatcagattggaaagcccactccaaagtttgtggcacc 543
|| |||||| || || |||||||| || |||| ||| ||||||||| | ||||||||
Sbjct: 772 tgctccaagaagtacgctgttcaatctgactggagagcacactccaaaatatgtggcacg 831
Query: 544 agagagtatagatgtgactgtggaaccctcttctccaggagggacagttttatcactcac 603
| || |||| ||||||||||||||| |||| ||||| || || ||||| ||||| |||
Sbjct: 832 aaggaatataagtgtgactgtggaaccatcttttccagaagagatagtttcatcacccac 891
Query: 604 agagccttctg 614
||||| |||||
Sbjct: 892 agagctttctg 902
>gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 781
Score = 85.7 bits (43), Expect = 8e-16
Identities = 157/195 (80%)
Strand = Plus / Plus
Query: 433 aagaagcactttttcaggaagcatggggagaagaaatggaagtgtgagaagtgttccaag 492
|||||||| || | ||| || ||||| |||||||| ||||| ||||| ||||| || |||
Sbjct: 404 aagaagcatttctgcagaaaacatggcgagaagaagtggaaatgtgacaagtgctctaag 463
Query: 493 cgttatgcagttcaatcagattggaaagcccactccaaagtttgtggcaccagagagtat 552
||||| |||||||| ||||||||||| |||||||| |||| || ||||||||||||
Sbjct: 464 aaatatgcggttcaatcggattggaaagctcactccaagatttgcggtaccagagagtat 523
Query: 553 agatgtgactgtggaaccctcttctccaggagggacagttttatcactcacagagccttc 612
| ||| || |||||||| | || || |||||||| || || ||||| || || || ||
Sbjct: 524 aaatgcgattgtggaactttgttttcaaggagggatagcttcatcacgcatagggcgttt 583
Query: 613 tgtgatgctttagca 627
|||||||| ||||||
Sbjct: 584 tgtgatgcgttagca 598
Score = 54.0 bits (27), Expect = 3e-06
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 223 atggcaacgaacaggttcatttgtgagatttgcaacaaagggtttagaagagatcagaat 282
||||| |||||||| || | ||||| || |||||||| |||||| || |||||||||
Sbjct: 197 atggcgacgaacagatttgtatgtgaaatatgcaacaaggggtttcagagggatcagaat 256
Query: 283 ctgcagcttcatagaagagggcataatttgccatggaagctga 325
|| ||||| ||| || | ||||| ||| |||||||||||||||
Sbjct: 257 cttcagctccatcgacgggggcacaatctgccatggaagctga 299
>gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 618
Score = 75.8 bits (38), Expect = 7e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 543 cagagagtatagatgtgactgtggaaccctcttctccaggagggacagttttatcactca 602
|||||| ||||||||||| ||||| ||||||||||| ||| | || ||||| ||||||||
Sbjct: 286 cagagaatatagatgtgattgtggcaccctcttctcaaggcgtgatagtttcatcactca 345
Query: 603 cagagccttctgtgatgc 620
|| ||||||||||||||
Sbjct: 346 tagggccttctgtgatgc 363
>gnl|LJGI|BW623067 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 516
Score = 69.9 bits (35), Expect = 5e-11
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 223 atggcaacgaacaggttcatttgtgagatttgcaacaaagggtttagaagagatcagaat 282
||||| |||||||| ||| | || || |||||||||||||||||| || || ||||||
Sbjct: 280 atggcgacgaacagattcgtatgcgaaatttgcaacaaagggtttcagagggaccagaat 339
Query: 283 ctgcagcttcatagaagagggcataatttgccatggaagctga 325
||||||||||| | ||||| || ||| |||||||||||||||
Sbjct: 340 ctgcagcttcaccggagaggtcacaatctgccatggaagctga 382
>gnl|LJGI|TC66141 similar to UniRef100_Q5UDB7 Cluster: INDETERMINATE-related protein
7; n=1; Zea mays|Rep: INDETERMINATE-related protein 7 -
Zea mays (Maize), partial (9%)
Length = 725
Score = 58.0 bits (29), Expect = 2e-07
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 210 tccccagacactcatggcaacgaacaggttcatttgtgagatttgcaacaaagggtt 266
|||| |||| || |||||||| ||||||||||| |||||| | ||||||||||||||
Sbjct: 650 tcccaagaccctaatggcaacaaacaggttcatatgtgaggtgtgcaacaaagggtt 706