Miyakogusa Predicted Gene

Lj0g3v0344429.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0344429.2 Non Chatacterized Hit- tr|Q6K844|Q6K844_ORYSJ
Putative uncharacterized protein OJ1548_F12.19
OS=Oryz,64.63,2e-19,BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN,Basic
helix-loop-helix leucine zipper transcription fac,CUFF.23650.2
         (306 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77685 similar to UniRef100_Q5ULY0 Cluster: Basic heli...   406   e-113
gnl|LJGI|TC68549 similar to UniRef100_Q9FUA4 Cluster: Transcript...   383   e-106
gnl|LJGI|GO020346 homologue to UniRef100_A7NTY9 Cluster: Chromos...    90   9e-18

>gnl|LJGI|TC77685 similar to UniRef100_Q5ULY0 Cluster: Basic helix-loop-helix
           protein; n=1; Fragaria x ananassa|Rep: Basic
           helix-loop-helix protein - Fragaria ananassa
           (Strawberry), partial (45%)
          Length = 688

 Score =  406 bits (205), Expect = e-113
 Identities = 232/241 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   aggagggcattgaagcattgggtgaagaggttaggacaaagtctgttccttcttctagga 64
           |||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 366 aggagggtgttgaagcattgggtgaagaggttaggacaaagtctcttccttcttctagga 425

                                                                       
Query: 65  gctcatctaaaaggactagagcagcagaggttcttaatttgtctggaaagaggagaagga 124
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 426 gctcatctaaaaggactagagcagcagaggttcataatttgtctgaaaagaggagaagga 485

                                                                       
Query: 125 gcaggatcaatgagaatatgaaggctttgcaaaatctaattccaaactctaacaagactg 184
           |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 486 gcaggatcaacgagaagatgaaggctttgcaaaatctgattccaaactctaacaagactg 545

                                                                       
Query: 185 ataaggctttcatgcttgatgaagctattgattaccttaaacagcttcagctccaagtac 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ataaggcttccatgcttgatgaagctattgattaccttaaacagcttcagctccaagtac 605

            
Query: 245 a 245
           |
Sbjct: 606 a 606


>gnl|LJGI|TC68549 similar to UniRef100_Q9FUA4 Cluster: Transcription factor SPATULA;
           n=2; Arabidopsis thaliana|Rep: Transcription factor
           SPATULA - Arabidopsis thaliana (Mouse-ear cress),
           partial (18%)
          Length = 840

 Score =  383 bits (193), Expect = e-106
 Identities = 232/246 (94%), Gaps = 8/246 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaggagggcattgaagcattgggtgaagaggttaggacaaagtctgttccttcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atgaaggagggcattgaagcattgggtgaagaggttaggacaaagtctgttccttcttct 549

                                                                       
Query: 61  aggagctcatctaaaaggactagagcagcagaggttcttaatttgtctggaaagaggaga 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||      
Sbjct: 550 aggagctcatctaaaaggactagagcagcagaggttcataatttgtctgaaaag------ 603

                                                                       
Query: 121 aggagcaggatcaatgagaatatgaaggctttgcaaaatctaattccaaactctaacaag 180
             |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 604 --gagcaggatcaacgagaaaatgaagactttgcaaaatctaattccaaactctaacaag 661

                                                                       
Query: 181 actgataaggctttcatgcttgatgaagctattgattaccttaaacagcttcagctccaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 actgataaggcttccatgcttgatgaagctattgattaccttaaacagcttcagctccaa 721

                 
Query: 241 gtacag 246
           ||||||
Sbjct: 722 gtacag 727


>gnl|LJGI|GO020346 homologue to UniRef100_A7NTY9 Cluster: Chromosome chr18 scaffold_1,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_1, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (23%)
          Length = 611

 Score = 89.7 bits (45), Expect = 9e-18
 Identities = 132/161 (81%)
 Strand = Plus / Plus

                                                                       
Query: 82  agagcagcagaggttcttaatttgtctggaaagaggagaaggagcaggatcaatgagaat 141
           ||||| |||||| | | ||||||||||| |||||| || ||||| | ||| || ||||| 
Sbjct: 401 agagctgcagagttccataatttgtctgaaaagagaaggaggagtaagattaacgagaaa 460

                                                                       
Query: 142 atgaaggctttgcaaaatctaattccaaactctaacaagactgataaggctttcatgctt 201
           ||||| || ||||| ||| |||||||||| |||||||||||||| || ||||  ||||| 
Sbjct: 461 atgaaagccttgcagaatttaattccaaattctaacaagactgacaaagcttcaatgctg 520

                                                    
Query: 202 gatgaagctattgattaccttaaacagcttcagctccaagt 242
           |||||||| || || ||| | || ||||||||||| |||||
Sbjct: 521 gatgaagccatagaatacttaaagcagcttcagcttcaagt 561