Miyakogusa Predicted Gene
- Lj0g3v0343009.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0343009.1 tr|H3GSS2|H3GSS2_PHYRM tRNA pseudouridine
synthase OS=Phytophthora ramorum
GN=fgenesh1_pg.C_scaffold,34.04,0.000000000000002,PSEUDOURIDYLATE
SYNTHASE,Pseudouridine synthase I, TruA; no description,Pseudouridine
synthase I, Tr,CUFF.23514.1
(1524 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS319357 similar to UniRef100_A7NVQ8 Cluster: Pseudouri... 971 0.0
gnl|LJGI|FS346259 similar to UniRef100_A7NVQ8 Cluster: Pseudouri... 916 0.0
>gnl|LJGI|FS319357 similar to UniRef100_A7NVQ8 Cluster: Pseudouridylate synthase; n=1;
Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
vinifera (Grape), partial (37%)
Length = 704
Score = 971 bits (490), Expect = 0.0
Identities = 493/494 (99%)
Strand = Plus / Plus
Query: 74 ctgccacaggcaccaagataagacccaagcgtcgcaagatagctattttctttgcttact 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ctgccacaggcaccaagataagacccaagcgtcgcaagatagctattttctttgcttact 270
Query: 134 gtggtgttggctatcagggtatgcagaaaaaccccggtgcaaagaccattgaaggtgacc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtggtgttggctatcagggtatgcagaaaaaccccggtgcaaagaccattgaaggtgacc 330
Query: 194 tagaagaagctttatatgcgtctggagctgtccctgacaatgatcgtggatatcctaaac 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tagaagaagctttatatgcgtctggagctgtccctgacaatgatcgtggatatcctaaac 390
Query: 254 ggtatgactttgctcgctcagctagaactgataaaggggttagtgctgttggtcaggttg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtatgactttgctcgctcagctagaactgataaaggggttagtgctgttggtcaggttg 450
Query: 314 tctccggccggttctatattgatccacctggccttgttgaccgccttaatttaaatctcc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tctccggccggttctatattgatccacctggccttgttgaccgccttaatttaaatctcc 510
Query: 374 cccctcagatccggatcttcggtttcaagcgtgtgacagcttcctatagtgccaagaagt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cccctcagatccggatcttcggtttcaagcgtgtgacagcttcctatagtgccaagaagt 570
Query: 434 tctgtgacaggaggaggtatgtctatctcatccctgtgtttgcccttgatccatgttgtc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctgtgacaggaggaggtatgtctatctcatccctgtgtttgcccttgatccatgttgtc 630
Query: 494 atcgtgatagagagactgtcctggctagtttggggtctgaaaatgaacttgttaagtgtt 553
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 631 atcgtgatagagagactgtcctggctagttttgggtctgaaaatgaacttgttaagtgtt 690
Query: 554 tgccgtgttctgag 567
||||||||||||||
Sbjct: 691 tgccgtgttctgag 704
Score = 143 bits (72), Expect = 4e-33
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 atggaaagttcagatgcaacactgactagttcatccctgccaccaccacctccattagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 atggaaagttcagatgcaacactgactagttcatccctgccaccaccacctccattagct 143
Query: 61 gcagaagatcca 72
||||||||||||
Sbjct: 144 gcagaagatcca 155
>gnl|LJGI|FS346259 similar to UniRef100_A7NVQ8 Cluster: Pseudouridylate synthase; n=1;
Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
vinifera (Grape), partial (37%)
Length = 798
Score = 916 bits (462), Expect = 0.0
Identities = 471/474 (99%)
Strand = Plus / Minus
Query: 1051 tttgacgcaaacaccactgttgcaattgagggcatggaatttgtgaagtgtgaggttgtt 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttgacgcaaacaccactgttgcaattgagggcatggaatttgtgaagtgtgaggttgtt 739
Query: 1111 gggcagagcttcatgcttcatcagatccggaagatgacggggcttgcagtggcaatcatg 1170
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 738 gggcagagcttcatgcttcatcagatccggaagatgatggggcttgcagtggcaatcatg 679
Query: 1171 agagattgtgcaccagagtcacttatcgataaagctttgcagaaggatgttagcatcata 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agagattgtgcaccagagtcacttatcgataaagctttgcagaaggatgttagcatcata 619
Query: 1231 gtgcctactgcccctgaagttggattgtatctagatgagtgcttttttacttcttataac 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtgcctactgcccctgaagttggattgtatctagatgagtgcttttttacttcttataac 559
Query: 1291 gacaaatggaaagatacccatgaagaggtgtcaatgaaagcgtatgagaaagaagctgaa 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gacaaatggaaagatacccatgaagaggtgtcaatgaaagcgtatgagaaagaagctgaa 499
Query: 1351 gacttcaaaatgaaatacatatattctcacattgcttccacagaacaaaaggaaggaact 1410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 gacttcaaaatgaaatacatatattctcacattgcttccacagaacgaaaggaaggaact 439
Query: 1411 gtcggtctttggttgcattctttgaaccatagaaattatccagatctgcgtatccttgat 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtcggtctttggttgcattctttgaaccatagaaattatccagatctgcgtatccttgat 379
Query: 1471 gaggaaggcatcaccgataacaagagatttgaaactgaaattgtgactgagtga 1524
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 gaggaaggcatcaccgataacaagagatctgaaactgaaattgtgactgagtga 325