Miyakogusa Predicted Gene
- Lj0g3v0342609.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0342609.1 Non Chatacterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.27,0,DNA
DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN
1)(UV-DAMAGED DNA-BINDING FACTOR),,CUFF.23486.1
(471 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70978 homologue to UniRef100_A7Q1B3 Cluster: Chromoso... 886 0.0
gnl|LJGI|TC67703 homologue to UniRef100_Q6QNU4 Cluster: DNA dama... 741 0.0
gnl|LJGI|TC80555 similar to UniRef100_Q9M0V3 Cluster: DNA damage... 260 7e-69
>gnl|LJGI|TC70978 homologue to UniRef100_A7Q1B3 Cluster: Chromosome chr10
scaffold_43, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (23%)
Length = 975
Score = 886 bits (447), Expect = 0.0
Identities = 465/471 (98%)
Strand = Plus / Plus
Query: 1 atgagtatatggaactacgtcgtcacagctcacaaacccaccaacgttacccattcttgc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 172 atgagtacatggaactacgtcgtcacagctcacaaacccaccaacgttacccattctggc 231
Query: 61 gtcggcaatttcaccggccctcaagacctcaatctcatcgtcgcgaaatgcacccgtatc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gtcggtaatttcaccggccctcaagacctcaatctcatcgtcgcgaaatgcacccgtatc 291
Query: 121 gagattcatttgctctctcctcagggcttgcagcccatgttagatgtgcccatttatgga 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 292 gagattcatttgctctctcctcagggcttgcaacccatgttagatgtgcccatttatgga 351
Query: 181 agaattgccacccttgaactcttccgccctcatggtgaagcacaggattatctgtttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agaattgccacccttgaactcttccgccctcatggtgaagcacaggattatctgtttgtt 411
Query: 241 gcgactaagcgatacaagttctgtgttcttcaatgggatcctgagacttctgaacttgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcgactaagcgatacaagttctgtgttcttcaatgggatcctgagacttctgaacttgtt 471
Query: 301 acaagggctatgggggatgtgtctgatcgtataggacgacccacagataatggacagatt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 472 acaagggctatgggggatgtgtctgatcgtataggacgacccacagataatggacaaatt 531
Query: 361 ggcattatcgatcctgattgtaggttgattggactccatttgtatgatggcttgtttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggcattatcgatcctgattgtaggttgattggactccatttgtatgatggcttgtttaaa 591
Query: 421 gttattcccttcgataataaaggacaactcaaggaagcgtttagtattagg 471
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 592 gttattcccttcgataataaaggacaactcaaggaagcgtttaatattagg 642
>gnl|LJGI|TC67703 homologue to UniRef100_Q6QNU4 Cluster: DNA damage-binding protein
1; n=1; Solanum lycopersicum|Rep: DNA damage-binding
protein 1 - Solanum lycopersicum (Tomato) (Lycopersicon
esculentum), partial (13%)
Length = 578
Score = 741 bits (374), Expect = 0.0
Identities = 407/418 (97%)
Strand = Plus / Plus
Query: 1 atgagtatatggaactacgtcgtcacagctcacaaacccaccaacgttacccattcttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgagtatatggaactacgtcgtcacagctcacaaacccaccaacgttacccattcttgc 220
Query: 61 gtcggcaatttcaccggccctcaagacctcaatctcatcgtcgcgaaatgcacccgtatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gtcggcaatttcaccggccctcaagacctcaatctcatcgtcgcgaaatgcacccgtatc 280
Query: 121 gagattcatttgctctctcctcagggcttgcagcccatgttagatgtgcccatttatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gagattcatttgctctctcctcagggcttgcagcccatgttagatgtgcccatttatgga 340
Query: 181 agaattgccacccttgaactcttccgccctcatggtgaagcacaggattatctgtttgtt 240
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 341 agaattgccacgcttgaactctttcgccctcatggtgaaacacaggattatctgtttgtt 400
Query: 241 gcgactaagcgatacaagttctgtgttcttcaatgggatcctgagacttctgaacttgtt 300
|||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 401 gcgactgaaagatacaagttctgtgttcttcaatgggatcccgagacttctgaacttgtt 460
Query: 301 acaagggctatgggggatgtgtctgatcgtataggacgacccacagataatggacagatt 360
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 461 acaagggctatgggggatgtttctgaccgtataggacggcccacagataatggacagatt 520
Query: 361 ggcattatcgatcctgattgtaggttgattggactccatttgtatgatggcttgttta 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 521 ggcattatcgatcctgattgtaggttgattgcactccatttgtatgatggcttgttta 578
>gnl|LJGI|TC80555 similar to UniRef100_Q9M0V3 Cluster: DNA damage-binding protein 1a;
n=2; Arabidopsis thaliana|Rep: DNA damage-binding
protein 1a - Arabidopsis thaliana (Mouse-ear cress),
partial (10%)
Length = 467
Score = 260 bits (131), Expect = 7e-69
Identities = 306/364 (84%), Gaps = 24/364 (6%)
Strand = Plus / Plus
Query: 9 atggaactacgtcgtcacagctcacaaacccaccaacgttacccattcttgcgtcggcaa 68
|||||||||||| || || ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 104 atggaactacgttgtgactgctcacaaacccaccaaagtcactcattcatgcgtcggcaa 163
Query: 69 tttcaccgg-ccctcaagacctcaatctcatcgtcgcgaaatgcacccg-tatcgag-at 125
| |||| || ||||||||||| ||||||||||||||| ||||||||||| | ||||| ||
Sbjct: 164 tgtcactggtccctcaagaccgcaatctcatcgtcgccaaatgcacccgatctcgagtat 223
Query: 126 tcatttgctctctcctcagg-------------------gc--ttgcagcccatgttaga 164
|||||||||||||||||||| || |||||||| || |||||
Sbjct: 224 tcatttgctctctcctcaggagggcttgcagttgcagttgcagttgcagcctattttaga 283
Query: 165 tgtgcccatttatggaagaattgccacccttgaactcttccgccctcatggtgaagcaca 224
|| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 284 cgtccccatatatggaagaattgccatccttcaactcttccgccctcatggtgaagcaca 343
Query: 225 ggattatctgtttgttgcgactaagcgatacaagttctgtgttcttcaatgggatcctga 284
||| | ||||||||||| |||| | |||||| |||||||||||||||||||||| |||
Sbjct: 344 ggaatgtctgtttgttgtgactgaaaaatacaaattctgtgttcttcaatgggatcgtga 403
Query: 285 gacttctgaacttgttacaagggctatgggggatgtgtctgatcgtataggacgacccac 344
|||| | |||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 404 gactcatcaacttgttacaagggctatgggggatgtttatgatcgtataggacggcccac 463
Query: 345 agat 348
||||
Sbjct: 464 agat 467