Miyakogusa Predicted Gene

Lj0g3v0342419.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0342419.1 Non Chatacterized Hit- tr|Q7VJP2|Q7VJP2_HELHP
Putative uncharacterized protein OS=Helicobacter hepat,38,8.1,
,CUFF.23467.1
         (252 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75879                                                      194   2e-49
gnl|LJGI|TC65140 weakly similar to UniRef100_Q9LVK5 Cluster: Ara...    50   6e-06

>gnl|LJGI|TC75879 
          Length = 952

 Score =  194 bits (98), Expect = 2e-49
 Identities = 162/182 (89%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                       
Query: 63  atcagatgctctccaaacagattttgggttgtgtgagcaat-catataatgagtatgtaa 121
           |||||||  |||||||||||||| ||||| | |||||| || |||||| |||||||||||
Sbjct: 667 atcagatattctccaaacagattctgggtggggtgagccattcatatagtgagtatgtaa 608

                                                                       
Query: 122 agctgttgtttctcacccttaaccaattccaggctcttacttgggctatctctaccactc 181
           |||||| ||| || ||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct: 607 agctgtggttcctgacccttaaccagttccaagctcttaattgggctatctctaccactc 548

                                                                       
Query: 182 tcccttcctccttttgcttattcttgaagaggattttgttccggtgtaaccacaaggacc 241
           |||||||||||||||| | ||||||||||||||| |  |||| |||||||||||||||||
Sbjct: 547 tcccttcctccttttgatcattcttgaagaggatatcattccagtgtaaccacaaggacc 488

             
Query: 242 aa 243
           ||
Sbjct: 487 aa 486


>gnl|LJGI|TC65140 weakly similar to UniRef100_Q9LVK5 Cluster: Arabidopsis thaliana
           genomic DNA, chromosome 3, P1 clone: MDC16; n=1;
           Arabidopsis thaliana|Rep: Arabidopsis thaliana genomic
           DNA, chromosome 3, P1 clone: MDC16 - Arabidopsis
           thaliana (Mouse-ear cress), partial (23%)
          Length = 629

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 127 ttgtttctcacccttaaccaattccaggctcttacttgggctatctcta 175
           |||||||||||||||| ||||||||| ||||| | ||| |||| |||||
Sbjct: 37  ttgtttctcacccttatccaattccaagctctcatttgagctaactcta 85