Miyakogusa Predicted Gene

Lj0g3v0342359.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0342359.2 tr|F2E9B9|F2E9B9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,54.74,4e-19,coiled-coil,NULL; seg,NULL,CUFF.23459.2
         (294 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC599939 similar to UniRef100_A7Q916 Cluster: Chromosom...   232   1e-60
gnl|LJGI|TC79167 weakly similar to UniRef100_A7Q916 Cluster: Chr...   147   4e-35
gnl|LJGI|BW594667                                                     115   2e-25

>gnl|LJGI|DC599939 similar to UniRef100_A7Q916 Cluster: Chromosome chr9 scaffold_65,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr9 scaffold_65, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 435

 Score =  232 bits (117), Expect = 1e-60
 Identities = 135/144 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgactgctgttaagatgcttttcaccgagcccccacagaagaaaaagtttgggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgatgactgctgttaagatgcttttcaccgagcccccacagaagaaaaagtttgggttt 326

                                                                       
Query: 61  gatttccatcttgtgcaannnnnnnnngcctgtatgccttccttggctgtgtatttggtg 120
           ||||||||||||||||||         |||||||||||||||||||||||||||||||||
Sbjct: 327 gatttccatcttgtgcaatttttttttgcctgtatgccttccttggctgtgtatttggtg 386

                                   
Query: 121 gcgcagtatgctcgttatgacatg 144
           ||||||||||||||||||||||||
Sbjct: 387 gcgcagtatgctcgttatgacatg 410


>gnl|LJGI|TC79167 weakly similar to UniRef100_A7Q916 Cluster: Chromosome chr9
           scaffold_65, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr9 scaffold_65, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (28%)
          Length = 688

 Score =  147 bits (74), Expect = 4e-35
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                       
Query: 221 tggaacttaatcctcctgaggaacgggaagcgaaatccgatccgcagcttatggaggtga 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37  tggaacttaatcctcctgaggaacgggaagcgaaatccgatccgcagcttatggaggtga 96

                         
Query: 281 aagtgagactggag 294
           ||||||||||||||
Sbjct: 97  aagtgagactggag 110


>gnl|LJGI|BW594667 
          Length = 485

 Score =  115 bits (58), Expect = 2e-25
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1   atgatgactgctgttaagatgcttttcaccgagcccccacagaagaaaaagtttgggt 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgatgactgctgttaagatgcttttcaccgagcccccacagaagaaaaagtttgggt 381