Miyakogusa Predicted Gene

Lj0g3v0342229.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0342229.1 tr|G7JJ22|G7JJ22_MEDTR Helicase swr1 OS=Medicago
truncatula GN=MTR_4g118720 PE=4 SV=1,61.66,0,coiled-coil,NULL;
HSA,Helicase/SANT-associated, DNA binding; seg,NULL; no
description,Glutamine-Leuc,CUFF.23470.1
         (2649 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP085060 weakly similar to UniRef100_A7NW95 Cluster: Ch...   141   3e-32

>gnl|LJGI|BP085060 weakly similar to UniRef100_A7NW95 Cluster: Chromosome chr5
           scaffold_2, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (4%)
          Length = 376

 Score =  141 bits (71), Expect = 3e-32
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttctggccggccaccagttgccccaagtagtggagcaactgatttttatcaaggatctg 391
           |||||||||| |||||| ||||||||| | |||||||  |||||| ||||||||||||||
Sbjct: 151 cttctggccgtccaccaattgccccaactggtggagctcctgattattatcaaggatctg 92

                                                                       
Query: 392 tgactcagaggagtggccagtcttttgatccagaaagtccatctagtttggactctaggt 451
           || |||||| |||| | || |||||||||| ||||||||||||||||||||| |||||||
Sbjct: 91  tggctcagaagagtagtcaatcttttgatcaagaaagtccatctagtttggattctaggt 32

                              
Query: 452 ctgctcactcgcaatcaca 470
           ||||| ||||||| |||||
Sbjct: 31  ctgct-actcgcagtcaca 14