Miyakogusa Predicted Gene

Lj0g3v0341299.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0341299.1 Non Chatacterized Hit- tr|G5DX57|G5DX57_SILLA
Putative uncharacterized protein (Fragment) OS=Silene
,37.67,3e-18,seg,NULL,CUFF.23367.1
         (628 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62128                                                       90   2e-17

>gnl|LJGI|TC62128 
          Length = 933

 Score = 89.7 bits (45), Expect = 2e-17
 Identities = 135/165 (81%)
 Strand = Plus / Plus

                                                                       
Query: 262 aagggaatcaaagatgatagatctagacgaatagagatagataatagggaagcagagtta 321
           |||||||||||  ||||||| || |  | ||| |||||||||||| ||||||| |||| |
Sbjct: 298 aagggaatcaagtatgataggtcaacccaaatggagatagataatggggaagctgagtca 357

                                                                       
Query: 322 agccagtcaaaacagaaaaactgtgaagattcgtctcccacaggtaagaagagaggaagg 381
           |||| | ||||  ||||||||| ||||||||  ||| |||  ||||||||||||||||||
Sbjct: 358 agccggacaaaggagaaaaactctgaagatttctcttccattggtaagaagagaggaagg 417

                                                        
Query: 382 acaaagctaaagaaattgcccttaagcatttgctcctcgaaagat 426
              ||||| || || |||||||| ||||||||| |||| ||||||
Sbjct: 418 gtgaagcttaaaaagttgcccttgagcatttgcacctccaaagat 462



 Score = 58.0 bits (29), Expect = 7e-08
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 552 tgaggctacatcaattcgtaaatgccaggagttcaaggcaccagcttgtatcaaacaaaa 611
           |||||||||||||||  | |||||||||||||||||||  || |||  ||||||||| ||
Sbjct: 597 tgaggctacatcaatgtgcaaatgccaggagttcaaggttcctgctattatcaaacagaa 656

                
Query: 612 taaag 616
           |||||
Sbjct: 657 taaag 661