Miyakogusa Predicted Gene
- Lj0g3v0340429.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0340429.1 tr|G7K538|G7K538_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_5g007130 PE=4
SV=1,31.72,2e-18,FBOX,F-box domain, cyclin-like; F-box,F-box domain,
cyclin-like; seg,NULL; F-BOX FAMILY PROTEIN,NULL,gene.g26661.t1.1
(918 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73194 weakly similar to UniRef100_A7QK65 Cluster: Chr... 174 6e-43
gnl|LJGI|FS326727 weakly similar to UniRef100_P0C2G1 Cluster: F-... 78 1e-13
>gnl|LJGI|TC73194 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (15%)
Length = 1713
Score = 174 bits (88), Expect = 6e-43
Identities = 190/224 (84%)
Strand = Plus / Plus
Query: 641 catatcctaccataaagttttgtgcttcccgccttatagaattcacttatgatggttatc 700
|||||||||||||||||||| ||||||| || |||| |||||||| |||| ||||| ||
Sbjct: 899 catatcctaccataaagtttcgtgcttcacgtcttaaagaattcagttatattggttctc 958
Query: 701 cattaccggaccccattgtgtttgatctatctgaagcacatattgcctatgctgatattc 760
||||||| ||||||| ||||||||||||||||| |||| || |||| | ||||||||||
Sbjct: 959 cattaccagaccccactgtgtttgatctatctgcagcaaatgttgcttctgctgatattt 1018
Query: 761 atattggtttgtacgaggaggaacgtttgcaagaaattatggttctttctagcaagattc 820
| |||||||||| |||| ||| |||||||||| || ||| ||||||| | ||||||
Sbjct: 1019 gttttggtttgtataaggaagaaaatttgcaagaagttgtggctctttctgtcgagattc 1078
Query: 821 tgatgcaatttaaaagtgtggaatgtttgaagtttcagaagtgg 864
||| | ||||| ||| |||||||||||||||||| |||||||||
Sbjct: 1079 tgaagaaatttcaaaatgtggaatgtttgaagttccagaagtgg 1122
Score = 119 bits (60), Expect = 3e-26
Identities = 102/116 (87%)
Strand = Plus / Plus
Query: 1 atgattagcaacctccctgacttcattattggtcacattctttcttttcttcccaccaaa 60
||||| || |||||||||||| |||||||||||| |||||||||| ||||||| ||||||
Sbjct: 238 atgataagtaacctccctgacgtcattattggtcgcattctttctcttcttcctaccaaa 297
Query: 61 gatgcagtcactacaagcattttatccaagagttggaaatacaactggaaatttat 116
||||||||| | ||||| ||||||||||||||||| |||||| |||| ||||||
Sbjct: 298 gatgcagtctccacaagtcttttatccaagagttggttatacaaatggacatttat 353
Score = 109 bits (55), Expect = 3e-23
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 479 ttggtgacacttgtaataactctggaaagattcaccttgttttcccacttctgagaaagt 538
|||||||| ||| | |||| ||||||||| |||||||| ||||||| ||||||||| |
Sbjct: 722 ttggtgacccttctgataaatctggaaaggttcaccttaatttcccagttctgagaacct 781
Query: 539 ataagacagaagattgcacttggtcatcaagtctaaagtatgtcactttagaagtacctc 598
|||||||| || ||||||||||| |||||| | |||| ||||||||||||||||||||
Sbjct: 782 ataagacaaaaagttgcacttggttgtcaagtgtgaagtgtgtcactttagaagtacctc 841
Query: 599 tggttgaagtggtttcaatacag 621
|| || |||| ||||| ||||||
Sbjct: 842 tgcttcaagtagtttctatacag 864
>gnl|LJGI|FS326727 weakly similar to UniRef100_P0C2G1 Cluster: F-box/LRR-repeat
protein At3g58980; n=1; Arabidopsis thaliana|Rep:
F-box/LRR-repeat protein At3g58980 - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 631
Score = 77.8 bits (39), Expect = 1e-13
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 7 agcaacctccctgacttcattattggtcacattctttcttttcttcccaccaaagatgca 66
|||||||| |||||||||||||||||||| ||||||||||||||| | | |||||||||
Sbjct: 262 agcaacctacctgacttcattattggtcatattctttcttttctttctgctaaagatgca 321
Query: 67 gtc 69
|||
Sbjct: 322 gtc 324
Score = 56.0 bits (28), Expect = 4e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 181 tttttaaactttgtgaacagtgtactacatcatctgaatagttcaagc 228
||||||||||||||| | || ||||| ||||||||| |||||||||||
Sbjct: 433 tttttaaactttgtgtatagagtacttcatcatctggatagttcaagc 480