Miyakogusa Predicted Gene

Lj0g3v0338819.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0338819.1 Non Chatacterized Hit- tr|F6XUI4|F6XUI4_CIOIN
Uncharacterized protein OS=Ciona intestinalis PE=4
SV=,36.89,0.000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Rab3
GTPase-activating protein catalytic subunit; seg,NUL,CUFF.23173.1
         (1428 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP037804 similar to UniRef100_A7P0N2 Cluster: Chromosom...   168   6e-41
gnl|LJGI|FS325263 similar to UniRef100_A7P0N2 Cluster: Chromosom...    70   4e-11

>gnl|LJGI|BP037804 similar to UniRef100_A7P0N2 Cluster: Chromosome chr19 scaffold_4,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr19 scaffold_4, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (23%)
          Length = 546

 Score =  168 bits (85), Expect = 6e-41
 Identities = 155/177 (87%), Gaps = 1/177 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1240 gagcttgttcttcgacttggtggctctttgcccatttggagatctaacattattggaacc 1299
            |||||||||||||||||||||| ||  ||||||   ||||||||||||||| |||||| |
Sbjct: 96   gagcttgttcttcgacttggtg-ctgattgccctgctggagatctaacattgttggaaac 154

                                                                        
Query: 1300 cggcgagcctatgtacactcctatcacgcaggagggagccttgcttacagaagatttgat 1359
             ||||||||| ||||| ||||| |||| ||||| ||| | ||||||||||||||| | ||
Sbjct: 155  tggcgagcctgtgtactctcctctcacccaggaaggacctttgcttacagaagatctaat 214

                                                                     
Query: 1360 caaagagacagaggagtttgtgcttcggacagggagtgttggtgctgggtgctctca 1416
             | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 215  tagagaaacagaggagtttgtgctgcggacagggagtgttggtgctgggtgctctca 271


>gnl|LJGI|FS325263 similar to UniRef100_A7P0N2 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (9%)
          Length = 731

 Score = 69.9 bits (35), Expect = 4e-11
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 100 gtatccaaagccagaaccgcattccattccgcagctgcaaaagcggagcgggttctcatg 159
           ||||| ||||| || || || ||| ||||||||||||| ||||||||||| ||||| |||
Sbjct: 456 gtatcgaaagcgaggacggccttcaattccgcagctgccaaagcggagcgagttcttatg 515

                      
Query: 160 gacttcaaatc 170
           |||||||||||
Sbjct: 516 gacttcaaatc 526



 Score = 60.0 bits (30), Expect = 4e-08
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                       
Query: 280 aagcatataaagtggagaccactacatataggaaagaagcaggattggcaagatagaatt 339
           ||||||| ||||||||| || | |||||||||||  ||||| ||||||||||||||| ||
Sbjct: 642 aagcataaaaagtggaggcctccacatataggaataaagcaagattggcaagatagattt 701

                                     
Query: 340 aaaaactttcggaaagggagaaaaga 365
           |  ||| |||||| ||| | ||||||
Sbjct: 702 aggaacattcggataggaaaaaaaga 727