Miyakogusa Predicted Gene

Lj0g3v0338709.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0338709.1 CUFF.23166.1
         (462 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74365                                                      299   8e-81
gnl|LJGI|BW619567 similar to UniRef100_A7PAF2 Cluster: Chromosom...   109   2e-23
gnl|LJGI|TC58241 similar to UniRef100_A7QAE1 Cluster: Chromosome...    60   1e-08

>gnl|LJGI|TC74365 
          Length = 488

 Score =  299 bits (151), Expect = 8e-81
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 312 tctctatctccgtatctcacgagagggtcactgctctgcgttgggaatctgcattcaact 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tctctatctccgtatctcacgagagggtcactgctctgcgttgggaatctgcattcaact 235

                                                                       
Query: 372 ctcaagagaaatggatctgtggaagacacatgtgcattcaagcaacttgcaaggttctgc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctcaagagaaatggatctgtggaagacacatgtgcattcaagcaacttgcaaggttctgc 295

                                          
Query: 432 tgcaattttaagtgcaggagatggctaactg 462
           |||||||||||||||||||||||||||||||
Sbjct: 296 tgcaattttaagtgcaggagatggctaactg 326



 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 197 tagatttggctggccgtcatcactcatca 225
           |||||||||||||||||||||||||||||
Sbjct: 61  tagatttggctggccgtcatcactcatca 89


>gnl|LJGI|BW619567 similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (49%)
          Length = 486

 Score =  109 bits (55), Expect = 2e-23
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                       
Query: 312 tctctatctccgtatctcacgagagggtcactgctctgcgttgggaatctgcattcaact 371
           |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 143 tctctatctccgtatctcacgagagggtcactgctctgcgtttgaaatctgcactcaact 202

                      
Query: 372 ctcaagagaaa 382
           |||||| ||||
Sbjct: 203 ctcaagtgaaa 213


>gnl|LJGI|TC58241 similar to UniRef100_A7QAE1 Cluster: Chromosome undetermined
           scaffold_70, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_70, whole
           genome shotgun sequence - Vitis vinifera (Grape),
           partial (36%)
          Length = 810

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 332 gagagggtcactgctctgcgttgggaatctgcattcaa 369
           ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 453 gagagggtcactgctttgcgttgggaatctgcactcaa 490