Miyakogusa Predicted Gene
- Lj0g3v0337699.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0337699.1 tr|B9IKV9|B9IKV9_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_261010
PE=3,31.75,2e-16,Mitochondrial carrier,Mitochondrial carrier domain;
MITOCARRIER,Mitochondrial carrier protein; seg,N,CUFF.23089.1
(1161 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77824 homologue to UniRef100_A7P5R3 Cluster: Chromoso... 698 0.0
gnl|LJGI|TC80755 similar to UniRef100_A7P5R3 Cluster: Chromosome... 618 e-176
gnl|LJGI|BW594669 similar to UniRef100_A7P5R3 Cluster: Chromosom... 523 e-148
gnl|LJGI|GO025947 similar to UniRef100_A7P5R3 Cluster: Chromosom... 52 8e-06
>gnl|LJGI|TC77824 homologue to UniRef100_A7P5R3 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (28%)
Length = 574
Score = 698 bits (352), Expect = 0.0
Identities = 382/388 (98%), Gaps = 3/388 (0%)
Strand = Plus / Plus
Query: 777 tcttattggagtcattccatatgctgccaccaattacttcgcgtacgacactttgcgaaa 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttattggagtcattccatatgctgccaccaattacttcgcgtacgacactttgcgaaa 60
Query: 837 aacataccggaaagttttcaaacaagagaagattggtaactttgagacccttttgattgg 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacataccggaaagttttcaaacaagagaagattggtaactttgagacccttttgattgg 120
Query: 897 ttcagcagctggtgctatttcaagcactgcaacttttccgctcgaggtggctcgcaagca 956
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 121 ttcagcagctggtgctatttcaagccctgccacttttccgctcgaggtggctcgcaagca 180
Query: 957 tatgcaagtgggagctctcagtggaagacagatttataaaaatgtggttcatgcacttgt 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgcaagtgggagctctcagtggaagacagatttataaaaatgtggttcatgcacttgt 240
Query: 1017 aagcatactagaacaagaagggatccaagggtt-atatagaggg-ctgggacctagttgc 1074
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 241 aagcatactagaacaagaagggatccaagggttcatatagagggactgggacctagttgc 300
Query: 1075 atgaagttggtgccggccgccggaatctctttcatgtgttatgaagcatgcaaga-gcat 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 301 atgaagttggtgccggccgccggaatctctttcatgtgttatgaagcatgcacgacgcat 360
Query: 1134 tttgatagatgatgatgagaagcaatag 1161
||||||||||||||||||||||||||||
Sbjct: 361 tttgatagatgatgatgagaagcaatag 388
>gnl|LJGI|TC80755 similar to UniRef100_A7P5R3 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (79%)
Length = 1662
Score = 618 bits (312), Expect = e-176
Identities = 705/836 (84%)
Strand = Plus / Plus
Query: 316 aggaggttgtttagtggggccgttgctggggcgatttcgcggaccgcggtggcgcctttg 375
||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||| |||
Sbjct: 540 aggaggttgtttagtggggccattgggggggcggtgtcgcgtaccgcggtggcgccgttg 599
Query: 376 gagactataaggactcatttgatggtgggaagtagtggcagttctacctctgaggtgttc 435
||||| |||||||||||||||||||| || ||||||||| ||| | |||||||||
Sbjct: 600 gagacgataaggactcatttgatggttgggagtagtggccattccagtggtgaggtgttt 659
Query: 436 cagaatattatgaagattgatggttggaaggggttgtttaggggtaatcttgttaatgtc 495
| ||||| ||||||| |||||| |||||||||||||||||||| ||| |||||||||||
Sbjct: 660 aataatatcatgaagagtgatgggtggaaggggttgtttaggggcaattttgttaatgtc 719
Query: 496 attcgggttgcgcctagcaaggccattgagctatttgctttcgatacagtaaacaagaac 555
||||| ||||| |||||||||||||||||||| ||||||| || ||||| |||||||||
Sbjct: 720 attcgtgttgcacctagcaaggccattgagctttttgcttatgacacagttaacaagaac 779
Query: 556 ttatcacctaagcttggggagcagtccaaattcccaattcctgcatcattgattgcaggt 615
| ||||| |||| |||||| ||| ||||| |||| ||||| ||||| |||||||||||
Sbjct: 780 ctttcaccaaagcctggggaacagcccaaactccccgttcctccatcactgattgcaggt 839
Query: 616 gcctgtgctggagtgagttcaactatatgcacatatcctcttgaattacttaagactcga 675
|| || |||||||| ||||||||| ||| ||||||||||| || |||||||| ||||||
Sbjct: 840 gcttgcgctggagttagttcaactttattgacatatcctctggagttacttaaaactcga 899
Query: 676 ctaactatccagagagatgtttacaatggtctacttgatgcctttgtgaaaataattcga 735
||||||||||||||| ||||||| | |||||| ||||||| || ||||||| |||||
Sbjct: 900 ttaactatccagagaggtgtttacgacggtctatttgatgcattcttgaaaatcgttcga 959
Query: 736 gaagagggtccttcagaactttacagaggcctcactcctagtcttattggagtcattcca 795
||||| ||| || ||||||||| |||||||| | ||||||||||||||||| ||||||
Sbjct: 960 gaagaaggtgctggagaactttatagaggccttgcacctagtcttattggagttattcca 1019
Query: 796 tatgctgccaccaattacttcgcgtacgacactttgcgaaaaacataccggaaagttttc 855
||| | |||||||||||||| || ||||| |||| | ||| ||||| | ||| ||| |
Sbjct: 1020 tattccgccaccaattactttgcctacgattctttaaggaaagcatacagaaaattttcc 1079
Query: 856 aaacaagagaagattggtaactttgagacccttttgattggttcagcagctggtgctatt 915
||||||||||||||||| ||| | || ||||| ||||| || ||| ||| |||||||||
Sbjct: 1080 aaacaagagaagattggcaacatcgaaaccctcttgataggatcattagcgggtgctatt 1139
Query: 916 tcaagcactgcaacttttccgctcgaggtggctcgcaagcatatgcaagtgggagctctc 975
||||| || ||||||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 1140 tcaagtaccgcaacttttccgctcgaagtggctcgcaagcacatgcaagttggagccctt 1199
Query: 976 agtggaagacagatttataaaaatgtggttcatgcacttgtaagcatactagaacaagaa 1035
|||||||| || | || || |||||| ||||||| |||| ||| || || ||| |||||
Sbjct: 1200 agtggaaggcaagtctacaagaatgtgcttcatgcccttgcaagtattcttgaaaaagaa 1259
Query: 1036 gggatccaagggttatatagagggctgggacctagttgcatgaagttggtgccggccgcc 1095
|||||||| || || ||||||||| ||||||| || ||||||||||||||||| || ||
Sbjct: 1260 gggatccagggtttgtatagagggttgggaccaagctgcatgaagttggtgccagctgca 1319
Query: 1096 ggaatctctttcatgtgttatgaagcatgcaagagcattttgatagatgatgatga 1151
||||||||||||||||| |||||||| |||||||| || || |||| ||||||||
Sbjct: 1320 ggaatctctttcatgtgctatgaagcctgcaagagaatactggtagaggatgatga 1375
>gnl|LJGI|BW594669 similar to UniRef100_A7P5R3 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 485
Score = 523 bits (264), Expect = e-148
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 atgggtaggaacaaaatccaactatttgatgacaaacgagatgggtttttctctgtctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atgggtaggaacaaaatccaactatttgatgacaaacgagatgggtttttctctgtctgc 281
Query: 61 gatttggggtaccatcatcccggaggcttgttcgccagcgttggtcaaaggggaatgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gatttggggtaccatcatcccggaggcttgttcgccagcgttggtcaaaggggaatgggg 341
Query: 121 ttcggtgatgtgcaacccaacaacccttctgattcccggaacaacaatggtggattgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttcggtgatgtgcaacccaacaacccttctgattcccggaacaacaatggtggattgaaa 401
Query: 181 cttccctttaacgatttgtatgcaaagtatgttcagtcactggggaaagttgagattgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttccctttaacgatttgtatgcaaagtatgttcagtcactggggaaagttgagattgtt 461
Query: 241 gatgatgatggagttaaggttaag 264
||||||||||||||||||||||||
Sbjct: 462 gatgatgatggagttaaggttaag 485
>gnl|LJGI|GO025947 similar to UniRef100_A7P5R3 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 750
Score = 52.0 bits (26), Expect = 8e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 363 ggtggcgcctttggagactataaggactcatttgatggtggg 404
||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 657 ggtggcgccattggagacgataag-actcatttgatggtggg 697