Miyakogusa Predicted Gene

Lj0g3v0336729.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0336729.1 Non Chatacterized Hit- tr|I1L9V5|I1L9V5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55832
PE,86.54,7e-19,BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN,NULL;
STEROL REGULATORY ELEMENT-BINDING PROTEIN,NULL;
n,NODE_109571_length_221_cov_18.832579.path2.1
         (156 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62805 similar to UniRef100_A2Q3E9 Cluster: Helix-loop...   111   1e-24
gnl|LJGI|AV772495 homologue to UniRef100_A2Q3E9 Cluster: Helix-l...    70   4e-12

>gnl|LJGI|TC62805 similar to UniRef100_A2Q3E9 Cluster: Helix-loop-helix DNA-binding;
           n=1; Medicago truncatula|Rep: Helix-loop-helix
           DNA-binding - Medicago truncatula (Barrel medic),
           partial (61%)
          Length = 831

 Score =  111 bits (56), Expect = 1e-24
 Identities = 101/116 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaacttttacaagagctagtccctggttgcaacaagatatcaggaacagcattggtt 60
           ||||| ||||||||||| || |||||||||||| |||||||||| ||||| |||||||||
Sbjct: 713 atgaagcttttacaagaactggtccctggttgcgacaagatatctggaacggcattggtt 772

                                                                   
Query: 61  ctagataatatcatcaaccatgtgcaatctctgcagcatgaagtggagattttatc 116
           || ||| | ||||| ||||||||||||||| |||| | | |||||||||| |||||
Sbjct: 773 ctggatgaaatcattaaccatgtgcaatctttgcaacgtcaagtggagatcttatc 828


>gnl|LJGI|AV772495 homologue to UniRef100_A2Q3E9 Cluster: Helix-loop-helix
           DNA-binding; n=1; Medicago truncatula|Rep:
           Helix-loop-helix DNA-binding - Medicago truncatula
           (Barrel medic), partial (19%)
          Length = 572

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 1   atgaaacttttacaagagctagtccctggttgcaacaag 39
           ||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 atgaaacttttacaagagctagtccctggttgctacaag 340