Miyakogusa Predicted Gene

Lj0g3v0336009.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0336009.1 Non Chatacterized Hit- tr|Q2RB37|Q2RB37_ORYSJ
Transposon protein, putative, CACTA, En/Spm sub-class
,48.31,2e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
coiled-coil,NULL; seg,NULL,CUFF.22967.1
         (452 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79216 weakly similar to UniRef100_Q04219 Cluster: TNP...   434   e-121

>gnl|LJGI|TC79216 weakly similar to UniRef100_Q04219 Cluster: TNP2; n=1; Antirrhinum
           majus|Rep: TNP2 - Antirrhinum majus (Garden snapdragon),
           partial (8%)
          Length = 959

 Score =  434 bits (219), Expect = e-121
 Identities = 293/319 (91%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatctagatagcgatac-tgatggtaatgactcttttgatgatattgatgccttatt 59
           |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 641 atggatctagatagtgatacatgatggtaatgacgcttttgatgatattgatgccttatt 700

                                                                       
Query: 60  ggttgagacatttaaggatgtggctgaagctggtagagtgcatgaaggcctcaatgaaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggttgagacatttaaggatgtggctgaagctggtagagtgcatgaaggcctcaatgaaga 760

                                                                       
Query: 120 tgcaaagaaattttataacctagttgaagatgcaaatcaagagttgtatcctggttgtnn 179
           |||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||  
Sbjct: 761 tgcaaataaattttataacctagtttgagatgcaaatcaagagttgtatcctggttgtaa 820

                                                                       
Query: 180 nnnnntttccactttatcgttcactattcgaatatatctcctaaaatctctctacggatg 239
                |||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 821 aaaaatttccactttatcgttcattattcgaatatatctcctaaaatctctctatggatg 880

                                                                       
Query: 240 gagcattgcatcgttcactgctaacctggagttattgaaagaagctattccagatttgaa 299
           ||||| ||||| ||||| ||||  ||| |||||||||| ||||||||||| | |||| ||
Sbjct: 881 gagcaatgcattgttcattgctctcctagagttattganagaagctattctatattttaa 940

                              
Query: 300 catccctatctctttcaat 318
           |||| ||||||||||||||
Sbjct: 941 catcgctatctctttcaat 959