Miyakogusa Predicted Gene

Lj0g3v0335859.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0335859.1 tr|B9IIG8|B9IIG8_POPTR Calcium dependent protein
kinase 20 (Fragment) OS=Populus trichocarpa
GN=CPK2,42.62,0.0003,SERINE/THREONINE-PROTEIN KINASE,NULL;
EF_HAND_2,EF-HAND 2; no description,EF-hand-like domain;
EF_ha,CUFF.22951.1
         (417 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60848 similar to UniRef100_A7QNT6 Cluster: Chromosome...    68   5e-11

>gnl|LJGI|TC60848 similar to UniRef100_A7QNT6 Cluster: Chromosome undetermined
           scaffold_134, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_134,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (34%)
          Length = 1085

 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 115/142 (80%)
 Strand = Plus / Plus

                                                                       
Query: 109 ttaatgcaagcggctgacattgataacagtggtaccatagactatggtgaattcctagct 168
           ||||||||||||||||| || ||||||||||| ||||| || ||||  |||||| | || 
Sbjct: 292 ttaatgcaagcggctgatatagataacagtgggaccattgattatgccgaattcattgcc 351

                                                                       
Query: 169 gctatgctccatctaaacaaggttcagaaagaggatcatctctttgcagccttctcctac 228
           ||||   | ||||| ||||||||| | | ||| ||||| || |||||||||||    |||
Sbjct: 352 gctacattgcatcttaacaaggttgaaagagaagatcacctatttgcagcctttaattac 411

                                 
Query: 229 tttgacaaagatgggagcggat 250
           ||||| |||||||| |||||||
Sbjct: 412 tttgataaagatggaagcggat 433