Miyakogusa Predicted Gene
- Lj0g3v0335059.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0335059.1 Non Chatacterized Hit- tr|C5YDD7|C5YDD7_SORBI
Putative uncharacterized protein Sb06g004500
OS=Sorghu,59.7,3e-19,UPF0172,Uncharacterised protein family UPF0172;
GB DEF: HYPOTHETICAL UPF0172 PROTEIN AT5G55940,NULL;,CUFF.22886.1
(207 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61180 similar to UniRef100_A7Q9C3 Cluster: Chromosome... 410 e-114
gnl|LJGI|TC78832 similar to UniRef100_A7Q9C3 Cluster: Chromosome... 398 e-111
gnl|LJGI|TC72177 369 e-102
gnl|LJGI|TC62317 339 4e-93
gnl|LJGI|GO024919 similar to UniRef100_A7Q9C3 Cluster: Chromosom... 168 8e-42
>gnl|LJGI|TC61180 similar to UniRef100_A7Q9C3 Cluster: Chromosome chr19 scaffold_66,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_66, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 946
Score = 410 bits (207), Expect = e-114
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 1 atgcagctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgcagctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaac 480
Query: 61 agtagattctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtagattctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatct 540
Query: 121 gagaaatggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gagaaatggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattgg 600
Query: 181 ctaaacccagggctctttaactgatgc 207
|||||||||||||||||||||||||||
Sbjct: 601 ctaaacccagggctctttaactgatgc 627
>gnl|LJGI|TC78832 similar to UniRef100_A7Q9C3 Cluster: Chromosome chr19 scaffold_66,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_66, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (51%)
Length = 558
Score = 398 bits (201), Expect = e-111
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 7 ctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaacagtaga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaacagtaga 97
Query: 67 ttctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatctgagaaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ttctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatctgagaaa 157
Query: 127 tggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattggctaaac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattggctaaac 217
Query: 187 ccagggctctttaactgatgc 207
|||||||||||||||||||||
Sbjct: 218 ccagggctctttaactgatgc 238
>gnl|LJGI|TC72177
Length = 680
Score = 369 bits (186), Expect = e-102
Identities = 199/202 (98%), Gaps = 1/202 (0%)
Strand = Plus / Plus
Query: 1 atgcagctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgcagctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaac 539
Query: 61 agtagattctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatct 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agtagattctctctcaaggagccatcagcaaatctggtcttatcagactatatttcatct 599
Query: 121 gagaaatggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagaaatggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattgg 659
Query: 181 ctaaacccagggctctttaact 202
|| |||||||| ||||||||||
Sbjct: 660 ct-aacccaggactctttaact 680
>gnl|LJGI|TC62317
Length = 998
Score = 339 bits (171), Expect = 4e-93
Identities = 198/207 (95%)
Strand = Plus / Plus
Query: 1 atgcagctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaac 60
|||||||||||| |||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 442 atgcagctttatcttagggatgcatctaagaactggaagttggctcagccagatgggaac 501
Query: 61 agtagattctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatct 120
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agtcgtttctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatct 561
Query: 121 gagaaatggaacaacattgtagattttgacgaccacctcgatgacttaagcaaggattgg 180
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct: 562 gagaaatggaacaacattgtagattttgatgaccacctcgatgacataagcaaggactgg 621
Query: 181 ctaaacccagggctctttaactgatgc 207
|||||||||||||||||||||||||||
Sbjct: 622 ctaaacccagggctctttaactgatgc 648
>gnl|LJGI|GO024919 similar to UniRef100_A7Q9C3 Cluster: Chromosome chr19 scaffold_66,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_66, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (62%)
Length = 710
Score = 168 bits (85), Expect = 8e-42
Identities = 117/125 (93%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 1 atgcagctttatgttagggatgcatctaagaactggaagttggttccgtcagatgggaac 60
|||||||||||| |||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 584 atgcagctttatcttagggatgcatctaagaactggaagttggctcagccagatgggaac 643
Query: 61 agtagattctctctcaaagagccatcagcaaatctggtcttatcagactatatttcatct 120
||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agtcgtttctctctc-aagag-catcagcaaatctggtcttatcagactatatttcatct 701
Query: 121 gagaa 125
|||||
Sbjct: 702 gagaa 706