Miyakogusa Predicted Gene
- Lj0g3v0333209.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0333209.1 tr|A9SIE8|A9SIE8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_130366,65,0.000000000001,RNA recognition motif,RNA
recognition motif domain; PUTATIVE UNCHARACTERIZED PROTEIN,NULL;
HETEROGEN,CUFF.22728.1
(513 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58794 similar to UniRef100_A7QTW3 Cluster: Chromosome... 1017 0.0
gnl|LJGI|BP066241 homologue to UniRef100_A7QTW3 Cluster: Chromos... 789 0.0
gnl|LJGI|TC64230 homologue to UniRef100_A7QTW3 Cluster: Chromoso... 777 0.0
gnl|LJGI|GO012400 homologue to UniRef100_A7QTW3 Cluster: Chromos... 428 e-119
>gnl|LJGI|TC58794 similar to UniRef100_A7QTW3 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (87%)
Length = 1468
Score = 1017 bits (513), Expect = 0.0
Identities = 513/513 (100%)
Strand = Plus / Plus
Query: 1 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 221
Query: 61 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 281
Query: 121 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 341
Query: 181 gaatttgcagatttgaatcaagctattgcgatgatatcctactatgcctcatcatcggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaatttgcagatttgaatcaagctattgcgatgatatcctactatgcctcatcatcggag 401
Query: 241 cctgcgcaagtacgagggaaaactgtgtatctgcaatattcaaataggcaagaaatcgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctgcgcaagtacgagggaaaactgtgtatctgcaatattcaaataggcaagaaatcgtg 461
Query: 301 aataacaaaactgctgctgatgttcctgggaatgtactcttagtaacgattgagggtaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aataacaaaactgctgctgatgttcctgggaatgtactcttagtaacgattgagggtaca 521
Query: 361 gatgcacgccttgttagcattgatgttttgcacttggtcttttcggcctttggatttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gatgcacgccttgttagcattgatgttttgcacttggtcttttcggcctttggatttgtg 581
Query: 421 cataagattacaacatttgagaagacagcaggattccaggcactggtgcaattctctgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cataagattacaacatttgagaagacagcaggattccaggcactggtgcaattctctgat 641
Query: 481 gcagagactgccacagctgcaaaggatgctttg 513
|||||||||||||||||||||||||||||||||
Sbjct: 642 gcagagactgccacagctgcaaaggatgctttg 674
>gnl|LJGI|BP066241 homologue to UniRef100_A7QTW3 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 531
Score = 789 bits (398), Expect = 0.0
Identities = 398/398 (100%)
Strand = Plus / Plus
Query: 1 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 141
Query: 61 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 201
Query: 121 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 261
Query: 181 gaatttgcagatttgaatcaagctattgcgatgatatcctactatgcctcatcatcggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaatttgcagatttgaatcaagctattgcgatgatatcctactatgcctcatcatcggag 321
Query: 241 cctgcgcaagtacgagggaaaactgtgtatctgcaatattcaaataggcaagaaatcgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctgcgcaagtacgagggaaaactgtgtatctgcaatattcaaataggcaagaaatcgtg 381
Query: 301 aataacaaaactgctgctgatgttcctgggaatgtactcttagtaacgattgagggtaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aataacaaaactgctgctgatgttcctgggaatgtactcttagtaacgattgagggtaca 441
Query: 361 gatgcacgccttgttagcattgatgttttgcacttggt 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatgcacgccttgttagcattgatgttttgcacttggt 479
>gnl|LJGI|TC64230 homologue to UniRef100_A7QTW3 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 739
Score = 777 bits (392), Expect = 0.0
Identities = 395/396 (99%)
Strand = Plus / Plus
Query: 1 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 117
Query: 61 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 177
Query: 121 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 237
Query: 181 gaatttgcagatttgaatcaagctattgcgatgatatcctactatgcctcatcatcggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaatttgcagatttgaatcaagctattgcgatgatatcctactatgcctcatcatcggag 297
Query: 241 cctgcgcaagtacgagggaaaactgtgtatctgcaatattcaaataggcaagaaatcgtg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 298 cctgcgcaagtacgagggaaaactgtgtatctgcaatattcaaataggcaagaaatcgcg 357
Query: 301 aataacaaaactgctgctgatgttcctgggaatgtactcttagtaacgattgagggtaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aataacaaaactgctgctgatgttcctgggaatgtactcttagtaacgattgagggtaca 417
Query: 361 gatgcacgccttgttagcattgatgttttgcacttg 396
||||||||||||||||||||||||||||||||||||
Sbjct: 418 gatgcacgccttgttagcattgatgttttgcacttg 453
>gnl|LJGI|GO012400 homologue to UniRef100_A7QTW3 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (16%)
Length = 694
Score = 428 bits (216), Expect = e-119
Identities = 219/220 (99%)
Strand = Plus / Plus
Query: 1 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atggcatcggtgtctactcagccacagttccgatacactcagccaccgtcgaaggtgctt 239
Query: 61 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catttgagaaacttgccatgggaatgcacagaggaggaacttattgaacttggaaagccg 299
Query: 121 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttggtaaagttgtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatc 359
Query: 181 gaatttgcagatttgaatcaagctattgcgatgatatcct 220
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 360 gaatttgcagatttgaatcaagctattgcgatgatttcct 399