Miyakogusa Predicted Gene
- Lj0g3v0332239.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0332239.1 Non Chatacterized Hit- tr|B6UGI9|B6UGI9_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,56.82,2e-19,seg,NULL; Ypt/Rab-GAP domain of gyp1p,Rab-GTPase-TBC
domain; no description,NULL; TBC1 DOMAIN FAMILY,CUFF.22646.1
(450 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS336750 similar to UniRef100_A7QHM3 Cluster: Chromosom... 547 e-155
gnl|LJGI|TC58759 similar to UniRef100_A7QHM3 Cluster: Chromosome... 105 2e-22
>gnl|LJGI|FS336750 similar to UniRef100_A7QHM3 Cluster: Chromosome chr5 scaffold_98,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_98, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 563
Score = 547 bits (276), Expect = e-155
Identities = 276/276 (100%)
Strand = Plus / Plus
Query: 114 acccgtaattcatgattcgcgaaccagacacaacggcattaccacctcacctccctcttc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acccgtaattcatgattcgcgaaccagacacaacggcattaccacctcacctccctcttc 347
Query: 174 ttcctccgcatcttcttccgatgacatctctcactcccgccaaggccacgctcaattgtt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttcctccgcatcttcttccgatgacatctctcactcccgccaaggccacgctcaattgtt 407
Query: 234 agccgagttatcaagaaaggtcatagatatgcgggaattgagaagactcgcatctcaagg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agccgagttatcaagaaaggtcatagatatgcgggaattgagaagactcgcatctcaagg 467
Query: 294 cattcctgatgcttctggtttgcgttctacagtctggaagcttttgcttgggtatcttcc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cattcctgatgcttctggtttgcgttctacagtctggaagcttttgcttgggtatcttcc 527
Query: 354 gcaagatcgcgccctttggtcctctgaattagcaaa 389
||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcaagatcgcgccctttggtcctctgaattagcaaa 563
Score = 172 bits (87), Expect = 1e-42
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 atgaagaagcgagtacccgactggctcaacagtcctctctggaactccgatcaccaccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atgaagaagcgagtacccgactggctcaacagtcctctctggaactccgatcaccaccgc 243
Query: 61 ttctccgccgcaccggacccgccggaa 87
|||||||||||||||||||||||||||
Sbjct: 244 ttctccgccgcaccggacccgccggaa 270
>gnl|LJGI|TC58759 similar to UniRef100_A7QHM3 Cluster: Chromosome chr5 scaffold_98,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_98, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (81%)
Length = 1616
Score = 105 bits (53), Expect = 2e-22
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 298 cctgatgcttctggtttgcgttctacagtctggaagcttttgcttgggtatcttccgcaa 357
|||||||||||||| | || || || || ||||||||||||||||| ||||||| || |
Sbjct: 385 cctgatgcttctgggatacgctccaccgtgtggaagcttttgcttggatatcttctgcca 444
Query: 358 gatcgcgccctttggtcctctgaattagcaaagaagaggtcccagtacaaacatttcaaa 417
||||| | |||||||| ||||||||||| |||||||| |||||||||| || ||||||
Sbjct: 445 gatcgagggctttggtcatctgaattagcgaagaagagaacccagtacaagcagttcaaa 504
Query: 418 gacgaccttctcatgaatcct 438
|| || ||||||||||||||
Sbjct: 505 gaggaggttctcatgaatcct 525