Miyakogusa Predicted Gene

Lj0g3v0332049.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0332049.1 Non Chatacterized Hit- tr|D7M4K0|D7M4K0_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,57.14,6e-19,no
description,NULL; Rhomboid,Peptidase S54, rhomboid domain;
seg,NULL,CUFF.22630.1
         (567 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73987 similar to UniRef100_A7P5B9 Cluster: Chromosome...   698   0.0  

>gnl|LJGI|TC73987 similar to UniRef100_A7P5B9 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (66%)
          Length = 1112

 Score =  698 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Plus

                                                                       
Query: 109 aacatcaaaccctttactcgcactgcccttcgtcattctcatcattccctctccctgctc 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aacatcaaaccctttactcgcactgcccttcgtcattctcatcattccctctccctgctc 208

                                                                       
Query: 169 cgtttccgctctcccactcattgcagcaaaatcaagaactcagatttggtgccgcagctg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cgtttccgctctcccactcattgcagcaaaatcaagaactcagatttggtgccgcagctg 268

                                                                       
Query: 229 gaacttgggaagccagaaaacaaaaggaaacccgagaagcgagccagcggaatattctgg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaacttgggaagccagaaaacaaaaggaaacccgagaagcgagccagcggaatattctgg 328

                                                                       
Query: 289 gtcatactcctcaacatcgggatatttgtggctgacaaattttttcaggttaatggcatt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtcatactcctcaacatcgggatatttgtggctgacaaattttttcaggttaatggcatt 388

                                                                       
Query: 349 aaggctatgtacctgtaccacaaccggccttcttggtaccagtttgtcacggcaacattt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaggctatgtacctgtaccacaaccggccttcttggtaccagtttgtcacggcaacattt 448

                                                               
Query: 409 tgccatgctaattggaagcatctttctagcaaccttttcttcttgtacattt 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgccatgctaattggaagcatctttctagcaaccttttcttcttgtacattt 500



 Score = 87.7 bits (44), Expect = 7e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                      
Query: 1  atggcacagctgagtgtgggtctgggaggaatgtctgcatacaa 44
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 atggcacagctgagtgtgggtctgggaggaatgtctgcatacaa 84