Miyakogusa Predicted Gene
- Lj0g3v0331349.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0331349.1 tr|A9SZH0|A9SZH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_167287,37.11,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL; CRM,RNA-binding, CRM
do,CUFF.22573.1
(609 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV410198 similar to UniRef100_P09789 Cluster: Glycine-r... 200 7e-51
gnl|LJGI|TC75812 similar to UniRef100_A7PMG5 Cluster: Chromosome... 161 6e-39
>gnl|LJGI|AV410198 similar to UniRef100_P09789 Cluster: Glycine-rich cell wall
structural protein 1 precursor; n=1; Petunia x
hybrida|Rep: Glycine-rich cell wall structural protein 1
precursor - Petunia hybrida (Petunia), partial (10%)
Length = 337
Score = 200 bits (101), Expect = 7e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 141 cgccaccccaacctccaccaccacttccaatccctccgccgccgccggagaaatcttcgt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cgccaccccaacctccaccaccacttccaatccctccgccgccgccggagaaatcttcgt 296
Query: 201 cccactcccccacaacatcccgaagcatcgcgtgggccaca 241
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cccactcccccacaacatcccgaagcatcgcgtgggccaca 337
Score = 143 bits (72), Expect = 1e-33
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 70 cccaaatccaaaacccgacccgccaatttcatcattcggagctccacctccgacacccaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cccaaatccaaaacccgacccgccaatttcatcattcggagctccacctccgacacccaa 162
Query: 130 acccgaactctc 141
||||||||||||
Sbjct: 163 acccgaactctc 174
>gnl|LJGI|TC75812 similar to UniRef100_A7PMG5 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 1364
Score = 161 bits (81), Expect = 6e-39
Identities = 153/183 (83%), Gaps = 28/183 (15%)
Strand = Plus / Plus
Query: 415 gagataatgaggttgacgactctagggtttcagatgaagcagaagatcaaggttggcaag 474
|||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct: 313 gagataatgaggttgacgacgctagggtttcagatgaag------------gttgggaag 360
Query: 475 gcggggatcaccgaagggatcgttaacgggattcacgagcggtggcggcggtctgaggtt 534
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcggggatcaccgaagggatcgttaacgggattcacgagcggtgg--------------- 405
Query: 535 gtgaggattgtttgtgatgatatttgcaggattaacatgaaaaggactcatgacttgttg 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 -tgaggattgtttgtgatgatatttgcaggattaacatgaaaaggactcatgacttgttg 464
Query: 595 gag 597
|||
Sbjct: 465 gag 467
Score = 119 bits (60), Expect = 2e-26
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 70 cccaaatccaaaacccgacccgccaatttcatcattcggagctccacctccgacacccaa 129
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct: 89 cccaaatccaaaacccgacccaccaatttcatcatccggagctccgcctccgacacccaa 148
Query: 130 acccgaactctc 141
||||||||||||
Sbjct: 149 acccgaactctc 160
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 280 ccgcttccgggcacgggaatcgcgcg 305
||||||||||||||||||||||||||
Sbjct: 220 ccgcttccgggcacgggaatcgcgcg 245