Miyakogusa Predicted Gene
- Lj0g3v0328729.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0328729.1 tr|G7KPS9|G7KPS9_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_6g0,65.7,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; PPR: pentatricopeptide repeat domain,Pent,CUFF.22384.1
(2223 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63037 weakly similar to UniRef100_A7NVU0 Cluster: Chr... 1195 0.0
gnl|LJGI|TC67484 similar to UniRef100_Q9SGQ6 Cluster: T23E18.21;... 878 0.0
gnl|LJGI|AV765971 similar to UniRef100_A7NVU0 Cluster: Chromosom... 573 e-162
gnl|LJGI|AV778667 similar to UniRef100_Q9SGQ6 Cluster: T23E18.21... 383 e-105
gnl|LJGI|FS347424 similar to UniRef100_Q5JCT5 Cluster: MHC class... 153 6e-36
gnl|LJGI|TC68038 weakly similar to UniRef100_A7NVU0 Cluster: Chr... 153 6e-36
>gnl|LJGI|TC63037 weakly similar to UniRef100_A7NVU0 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 806
Score = 1195 bits (603), Expect = 0.0
Identities = 603/603 (100%)
Strand = Plus / Plus
Query: 1621 cgtcaagggtttagcccagtgacttgtacatatactgctcttattaagattttgttgcaa 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtcaagggtttagcccagtgacttgtacatatactgctcttattaagattttgttgcaa 60
Query: 1681 gatgagaaatttaatgaagccttgaatcttttggaacgaaccagattggatggcatccaa 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgagaaatttaatgaagccttgaatcttttggaacgaaccagattggatggcatccaa 120
Query: 1741 cttgatgtacttttgtttaatacatttcttcgccaagcatgttacaagagaaggatcgac 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgatgtacttttgtttaatacatttcttcgccaagcatgttacaagagaaggatcgac 180
Query: 1801 ataattgagcttattgtggagtatatgcaccaagagaaagttagacccaatccagtgact 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataattgagcttattgtggagtatatgcaccaagagaaagttagacccaatccagtgact 240
Query: 1861 tgcggctatgtcttctctgcatatgtgaactcaggttttcacaatacagcaatagaagca 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcggctatgtcttctctgcatatgtgaactcaggttttcacaatacagcaatagaagca 300
Query: 1921 ttgcaggttttaagtttgcgtatgatgtcagaagatggcaatattcttagagagaagagg 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgcaggttttaagtttgcgtatgatgtcagaagatggcaatattcttagagagaagagg 360
Query: 1981 agatttgtggatgaattcatccttgctgaagattcggctgctgagtcagatatactagtt 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agatttgtggatgaattcatccttgctgaagattcggctgctgagtcagatatactagtt 420
Query: 2041 aaattatttgaagattctgaagatgaatttgcagttgggttgttgaatttaagatggtgc 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaattatttgaagattctgaagatgaatttgcagttgggttgttgaatttaagatggtgc 480
Query: 2101 gctgtacttgggtttccagtttgcgagtcagctgatcaaagcttatgggctaaaagaatt 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctgtacttgggtttccagtttgcgagtcagctgatcaaagcttatgggctaaaagaatt 540
Query: 2161 gaattacaattccataaaaggcggctaaaagaatcgaattacaattccttcaaaggctag 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattacaattccataaaaggcggctaaaagaatcgaattacaattccttcaaaggctag 600
Query: 2221 tgg 2223
|||
Sbjct: 601 tgg 603
>gnl|LJGI|TC67484 similar to UniRef100_Q9SGQ6 Cluster: T23E18.21; n=1; Arabidopsis
thaliana|Rep: T23E18.21 - Arabidopsis thaliana
(Mouse-ear cress), partial (11%)
Length = 816
Score = 878 bits (443), Expect = 0.0
Identities = 443/443 (100%)
Strand = Plus / Plus
Query: 1 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatggaggccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatggaggccctt 433
Query: 61 tgtaaagggggttacttggatgaggcctttaatttgatggattttcttggagtaagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtaaagggggttacttggatgaggcctttaatttgatggattttcttggagtaagtcaa 493
Query: 121 catctccgtccacttctcccgctatacaatattctcttaagatcctgcgtggaatcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catctccgtccacttctcccgctatacaatattctcttaagatcctgcgtggaatcaaag 553
Query: 181 agtataattcaagcaagcaaatgtttggaattaatggaaaaacaaatggtgggaaagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agtataattcaagcaagcaaatgtttggaattaatggaaaaacaaatggtgggaaagaat 613
Query: 241 gaagctacatattctgagcttctcaagcttgcagttttgcagagaagcttgcctacagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaagctacatattctgagcttctcaagcttgcagttttgcagagaagcttgcctacagcc 673
Query: 301 cttctaatttggcaggagtataataaacatcacagtaagagtatcattgctttgcataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cttctaatttggcaggagtataataaacatcacagtaagagtatcattgctttgcataaa 733
Query: 361 tttatttggacctttataaggttgggagatttaaaatcggcatatgaagcactacaacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttatttggacctttataaggttgggagatttaaaatcggcatatgaagcactacaacag 793
Query: 421 atggtgtcattacccatgacggg 443
|||||||||||||||||||||||
Sbjct: 794 atggtgtcattacccatgacggg 816
>gnl|LJGI|AV765971 similar to UniRef100_A7NVU0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 322
Score = 573 bits (289), Expect = e-162
Identities = 319/325 (98%), Gaps = 3/325 (0%)
Strand = Plus / Plus
Query: 1039 ctggatcggatttctgaatgtctatctccgcatccttataatgctttgctagcatcatgt 1098
||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 ctggatcggattt-tga-tgtctatctccgcatcctaa-aatgctttgctagcatcatgt 57
Query: 1099 aatgtactgaatcaacctgagcgtgctgttcaagtgttcgccaagatgaagcagataaaa 1158
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 58 aatgtactgaatcaacctgagcgtgctgttcatgtgttcgccaagatgaagcagataaaa 117
Query: 1159 cttttacctgatattaggacatacgagctgctattctcgctatttggttttgtaaattcc 1218
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ctcttacctgatattaggacatacgagctgctattctcgctatttggttttgtaaattcc 177
Query: 1219 ccatatgaacatagtaatatgctatcacaattgcatgttgcaaaaagaataaatgctata 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ccatatgaacatagtaatatgctatcacaattgcatgttgcaaaaagaataaatgctata 237
Query: 1279 gaaagggatatggccaacaatggcgttcagcacagtcacctttcaatgaaaaacttattg 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaagggatatggccaacaatggcgttcagcacagtcacctttcaatgaaaaacttattg 297
Query: 1339 aatgcccttggagaagaaaggatga 1363
|||||||||||||||||||||||||
Sbjct: 298 aatgcccttggagaagaaaggatga 322
>gnl|LJGI|AV778667 similar to UniRef100_Q9SGQ6 Cluster: T23E18.21; n=1; Arabidopsis
thaliana|Rep: T23E18.21 - Arabidopsis thaliana
(Mouse-ear cress), partial (3%)
Length = 527
Score = 383 bits (193), Expect = e-105
Identities = 235/249 (94%)
Strand = Plus / Plus
Query: 1 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatggaggccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatggaggccctt 338
Query: 61 tgtaaagggggttacttggatgaggcctttaatttgatggattttcttggagtaagtcaa 120
|| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 339 ggtggagggggttacttggatgaggcctttaatgggatggatttgcttggagtaagtcaa 398
Query: 121 catctccgtccacttctcccgctatacaatattctcttaagatcctgcgtggaatcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 catctccgtccacttctcccgctatacaatattctcttaagatcctgcgtggaatcaaag 458
Query: 181 agtataattcaagcaagcaaatgtttggaattaatggaaaaacaaatggtgggaaagaat 240
|||||||||||||||||||| |||||||| | ||||||||| | |||||||||||| |
Sbjct: 459 agtataattcaagcaagcaagtgtttggagtgaatggaaaagcgggtggtgggaaagact 518
Query: 241 gaagctaca 249
|||||||||
Sbjct: 519 gaagctaca 527
>gnl|LJGI|FS347424 similar to UniRef100_Q5JCT5 Cluster: MHC class I chain-related
antigen MICH3; n=1; Macaca fascicularis|Rep: MHC class I
chain-related antigen MICH3 - Macaca fascicularis (Crab
eating macaque) (Cynomolgus monkey), partial (8%)
Length = 765
Score = 153 bits (77), Expect = 6e-36
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 1 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatggaggccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatgaaggccctt 306
Query: 61 tgtaaagggggttacttggatgagg 85
|||||||| ||||||||||||||||
Sbjct: 305 tgtaaaggaggttacttggatgagg 281
>gnl|LJGI|TC68038 weakly similar to UniRef100_A7NVU0 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (7%)
Length = 1257
Score = 153 bits (77), Expect = 6e-36
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatggaggccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 902 atggagttaaaagatgttagcatgaataatatatgctcctctcttatgatgaaggccctt 961
Query: 61 tgtaaagggggttacttggatgagg 85
|||||||| ||||||||||||||||
Sbjct: 962 tgtaaaggaggttacttggatgagg 986