Miyakogusa Predicted Gene

Lj0g3v0326949.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0326949.1 tr|G7LDQ8|G7LDQ8_MEDTR Translation initiation
factor OS=Medicago truncatula GN=MTR_8g061130 PE=3
SV=,67.97,2.94273e-44,Ribosomal protein S1-like RNA-binding
domain,RNA-binding domain, S1; Nucleic acid-binding
proteins,N,CUFF.22240.1
         (427 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72935 homologue to UniRef100_Q94KR7 Cluster: Translat...   846   0.0  

>gnl|LJGI|TC72935 homologue to UniRef100_Q94KR7 Cluster: Translation initiation
           factor IF-1, chloroplast precursor; n=1; Glycine
           max|Rep: Translation initiation factor IF-1, chloroplast
           precursor - Glycine max (Soybean), partial (53%)
          Length = 520

 Score =  846 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttcacctcatcatctctcttctcattccacactccaactccaacccttcatcatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  atgttcacctcatcatctctcttctcattccacactccaactccaacccttcatcatcat 122

                                                                       
Query: 61  cataatctcattcccttaaccaccaccacacactcctttcgctttcttcaaccactcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cataatctcattcccttaaccaccaccacacactcctttcgctttcttcaaccactcaac 182

                                                                       
Query: 121 caccctctctccctctcccactcgccggcgcccttctccgccgccgccaagccacccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 caccctctctccctctcccactcgccggcgcccttctccgccgccgccaagccacccacc 242

                                                                       
Query: 181 gccgacaagtccagcgagcagaaatgggtccacgagggtctcatcactgagtccctcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gccgacaagtccagcgagcagaaatgggtccacgagggtctcatcactgagtccctcccc 302

                                                                       
Query: 241 aacggcatgttccgtgtccgcctcgacaacgaggaccttatcctcggctatgtctccggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aacggcatgttccgtgtccgcctcgacaacgaggaccttatcctcggctatgtctccggc 362

                                                                       
Query: 301 aagatccggaagaacttcgttcggatccttcccggcgacagggtcaaagttgaggtcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagatccggaagaacttcgttcggatccttcccggcgacagggtcaaagttgaggtcagt 422

                                                                       
Query: 361 cgctatgattcttccaaaggacgcatagtttacaggctccgtaacaccggtggtggctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cgctatgattcttccaaaggacgcatagtttacaggctccgtaacaccggtggtggctcc 482

                  
Query: 421 tcttagc 427
           |||||||
Sbjct: 483 tcttagc 489