Miyakogusa Predicted Gene
- Lj0g3v0326409.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0326409.1 Non Chatacterized Hit- tr|B9SJY8|B9SJY8_RICCO
ATP-dependent RNA helicase, putative OS=Ricinus
commun,77.38,0,SUBFAMILY NOT NAMED,NULL; ATP-DEPENDENT RNA
HELICASE,NULL; no description,NULL; no description,Doubl,CUFF.22199.1
(3291 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS318755 similar to UniRef100_A7P3F8 Cluster: Chromosom... 880 0.0
gnl|LJGI|FS345686 similar to UniRef100_A7P3F8 Cluster: Chromosom... 333 4e-90
gnl|LJGI|TC71250 weakly similar to UniRef100_A7P3F8 Cluster: Chr... 280 5e-74
gnl|LJGI|TC57832 similar to UniRef100_UPI0000197023 Cluster: hel... 252 1e-65
gnl|LJGI|DC598572 94 7e-18
gnl|LJGI|AV407363 homologue to UniRef100_A7QXE2 Cluster: Chromos... 64 6e-09
>gnl|LJGI|FS318755 similar to UniRef100_A7P3F8 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (26%)
Length = 812
Score = 880 bits (444), Expect = 0.0
Identities = 720/812 (88%)
Strand = Plus / Plus
Query: 1161 tagaactcattttttggaggacattctggaaacgtcggggtacagattgaccccggagaa 1220
||||||| ||||||||||| ||||||| |||| | |||| || |||||||| || | ||
Sbjct: 1 tagaacttattttttggagaacattctcgaaatgacgggctatagattgactccttataa 60
Query: 1221 tcaaattgatgattatggtcaggaaaggatttggaaaatgaacaagcaggctccaagaaa 1280
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct: 61 tcaaattgatgattatggtcaagaaaggatgtggaaaatgaacaaacaggctccaagaaa 120
Query: 1281 gaggaaaagccaaattgcttctgctgtagaggatgcattaagagatgctgatttcaaaga 1340
||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||||
Sbjct: 121 gaggaaaagccaaattgcttccactgtagaggatgcaattagagctgctgatttcaaaga 180
Query: 1341 ttatagtctgcaaacaagggagtctttgtcatgttggaatcctgactgcattggttttaa 1400
||| || | || ||| ||| |||||||||||||||||||| ||||| || |||||||
Sbjct: 181 ttacagcccacagacacaggaatctttgtcatgttggaatccagactgtataggttttag 240
Query: 1401 cctaatagaatacatcttatgcaatatatgtgagaatgaaaggccaggtgctgttttggt 1460
|| || ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 241 tctcattgaatatatcttatgcaatatttgtgaaaatgaaaggcctggtgctgttttggt 300
Query: 1461 ttttatgactgggtgggatgatataagtgctctgaaggagaagctcctaacacatcctgt 1520
||| |||||||| |||||||||||||| ||||||| ||||||||||| | | || |||
Sbjct: 301 tttcatgactggatgggatgatataagctctctgaaagagaagctcctgagaaataatgt 360
Query: 1521 cttgggagatccaagccaagtcttgttgcttacgtgtcatggttcaatggccagttcgga 1580
||||||||||||| | || ||||||||| | |||||||| |||||||| ||||| ||
Sbjct: 361 attgggagatccaaatcgtgttttgttgcttgcatgtcatggctcaatggctagttctga 420
Query: 1581 gcagaggttaatatttgaagagcctgaagatggagtacgaaaaatagtgctagcaacaaa 1640
||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 421 gcagaggttaatattcgaagagcctgaagatggagttagaaaaatagtgctcgcaacaaa 480
Query: 1641 tattgctgaaactagtatcaccataaatgatgttgtttttgttcttgactgtggaaaggc 1700
|||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct: 481 tattgctgaaacgagtatcacaatcaatgatgttgtttttgttctagactgcggaaaggc 540
Query: 1701 aaaagaatcatcatatgatgcacttaataacacaccttgtttgcttcccacctggatctc 1760
||||||| |||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 541 aaaagaaacatcatatgatgcactgaataacacgccttgtttgcttcctacatggatctc 600
Query: 1761 caaagtttctgttcaacaaagaaaaggaagagctggtcgtgttcaaccgggagaatgtta 1820
|| ||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct: 601 taaggtttctgctcaacaaagaagaggaagagctggtcgcgttcaaccgggagagtgtta 660
Query: 1821 ccatctttatcctagatgtgtatatggtgcttttgcagaatatcaattgccagaaatttt 1880
|||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 661 ccatctctatcctagatgcgtatatgatgcttttgcagagtatcaattgccagaaatttt 720
Query: 1881 gaggacacctttgcaatctctctgtctgcaaatcaaaagtttaaaactaggaagtatatc 1940
||| ||||| |||||||||||||| | |||||||||||||||| ||| |||||||||||
Sbjct: 721 gagaacaccactgcaatctctctgtttacaaatcaaaagtttaagacttggaagtatatc 780
Query: 1941 tgagttcttgtctagggctttacagtctcctg 1972
||||||||||||||||||| | ||||||||||
Sbjct: 781 tgagttcttgtctagggctctgcagtctcctg 812
>gnl|LJGI|FS345686 similar to UniRef100_A7P3F8 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (23%)
Length = 731
Score = 333 bits (168), Expect = 4e-90
Identities = 237/260 (91%)
Strand = Plus / Minus
Query: 2578 aatgctcgggaaactaaaattccatatccatggctagtttttaatgagaagataaaagtg 2637
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 723 aatgctcgggaaactacaattccaagtccatggctagtttttaatgagaagataaaagtg 664
Query: 2638 aactcagtatttctccgtgactcaacagctgtgtctgattcagtggtgcttctttttggt 2697
|||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 663 aactcagtttttctccgtgactcaacagctgtgtccgactcagtggtgcttctctttggg 604
Query: 2698 ggcagcatctcaaaaggagatactgatggtcacttaaaaatgtttggaggatatctggag 2757
|| | | | |||||||||||| | ||| ||||||||||||||| |||||||||||||||
Sbjct: 603 ggaaacttgtcaaaaggagatgccgataatcacttaaaaatgttaggaggatatctggag 544
Query: 2758 tttttcatgaaggctgatgttgctgacatgtacctgagtataaggagagaacttgacatc 2817
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 543 tttttcatggaacctgatgttgctgacatgtacctgagtataaggagagaacttgatgac 484
Query: 2818 ttcattcagagcaaactact 2837
||||||||||||||||||||
Sbjct: 483 ttcattcagagcaaactact 464
Score = 91.7 bits (46), Expect = 3e-17
Identities = 175/218 (80%)
Strand = Plus / Minus
Query: 2983 gcattggtttcaaggactgagagtggacctggcggtgataactccaaaagtcagcttcaa 3042
|||||| ||||||||| |||||| |||||||| ||||| || |||||||||||||| |||
Sbjct: 318 gcattgttttcaaggattgagagcggacctgggggtgaaaattccaaaagtcagctccaa 259
Query: 3043 acattgctgacacgtgccggatatgatgttcccttatacaagaccatacaattgaagaac 3102
|| ||||| || | || ||||||| | ||||| |||||||| ||| || | ||||
Sbjct: 258 accttgcttgcaagagcaggatatgctaaacccttctacaagactgaacagttaatgaac 199
Query: 3103 aatcagtttcagtctacagttgagtttcaaggagtgcagttaatgggacaaccttgtaac 3162
| ||||||||| |||| || ||||| | ||| ||||| |||| || | |||||||||
Sbjct: 198 agccagtttcaggctactgtcgagttcaatggaatgcagataataggcctaccttgtaat 139
Query: 3163 aacaagaagaatgcagaaaaagatgctgcagctgaggc 3200
|| ||||||| ||||||||||| || |||||||||||
Sbjct: 138 aataagaagagtgcagaaaaagccgccgcagctgaggc 101
>gnl|LJGI|TC71250 weakly similar to UniRef100_A7P3F8 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 805
Score = 280 bits (141), Expect = 5e-74
Identities = 157/165 (95%)
Strand = Plus / Plus
Query: 3127 tttcaaggagtgcagttaatgggacaaccttgtaacaacaagaagaatgcagaaaaagat 3186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttcaaggagtgcagttaatgggacaaccttgtaacaacaagaagaatgcagaaaaagat 67
Query: 3187 gctgcagctgaggcactagagtggcttatgagtagaagtcagacagggaatgagtacacc 3246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgcagctgaggcactagagtggcttatgagtagaagtcagacagggaatgagtacacc 127
Query: 3247 aataacatgacaatgctnnnnnnnnttaagaaggatcataattaa 3291
||||||||||||||||| ||||||||||||||||||||
Sbjct: 128 aataacatgacaatgctaaaaaaaattaagaaggatcataattaa 172
>gnl|LJGI|TC57832 similar to UniRef100_UPI0000197023 Cluster: helicase
domain-containing protein; n=1; Arabidopsis thaliana|Rep:
helicase domain-containing protein - Arabidopsis
thaliana, partial (23%)
Length = 828
Score = 252 bits (127), Expect = 1e-65
Identities = 550/691 (79%)
Strand = Plus / Plus
Query: 1433 agaatgaaaggccaggtgctgttttggtttttatgactgggtgggatgatataagtgctc 1492
|||||||||||||||||||| || |||| ||||||||||| ||||||||||||| ||
Sbjct: 130 agaatgaaaggccaggtgctattctggtatttatgactggttgggatgatataaacactt 189
Query: 1493 tgaaggagaagctcctaacacatcctgtcttgggagatccaagccaagtcttgttgctta 1552
| ||||| |||||| | | |||||| | |||| |||| |||| ||| || | |||
Sbjct: 190 taaaggatcagctccaagctcatcctttgctgggtgatcagagccgagtattacttcttg 249
Query: 1553 cgtgtcatggttcaatggccagttcggagcagaggttaatatttgaagagcctgaagatg 1612
| || |||||||| ||||||||| | ||||||| ||| ||||||||| | || |||| |
Sbjct: 250 catgccatggttctatggccagtgctgagcagaagttgatatttgaaaatccagaaggag 309
Query: 1613 gagtacgaaaaatagtgctagcaacaaatattgctgaaactagtatcaccataaatgatg 1672
| || | ||||| || || || || || || || || |||||||| ||||| |||||||
Sbjct: 310 gggtgaggaaaattgttcttgctactaacatggcagagactagtattaccatcaatgatg 369
Query: 1673 ttgtttttgttcttgactgtggaaaggcaaaagaatcatcatatgatgcacttaataaca 1732
|||| ||||| | || |||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 370 ttgtctttgtggtagattgtggaaaagcaaaagagacatcatatgatgcaataaataaca 429
Query: 1733 caccttgtttgcttcccacctggatctccaaagtttctgttcaacaaagaaaaggaagag 1792
| |||||||||||||| | |||||||| |||| | || | ||| |||| |||||| |
Sbjct: 430 ctccttgtttgcttccgtcttggatctcaaaagctgcttcgcgacagagaagaggaaggg 489
Query: 1793 ctggtcgtgttcaaccgggagaatgttaccatctttatcctagatgtgtatatggtgctt 1852
|||||||||||||||| |||||||| |||||||||||||| | |||||| |||| |||||
Sbjct: 490 ctggtcgtgttcaacccggagaatgctaccatctttatcccaaatgtgtttatgatgctt 549
Query: 1853 ttgcagaatatcaattgccagaaattttgaggacacctttgcaatctctctgtctgcaaa 1912
|||| || |||||||||||||| |||| || ||||||||||| || | ||||||||||
Sbjct: 550 ttgctgattatcaattgccagagcttttaagaacacctttgcagtccttatgtctgcaaa 609
Query: 1913 tcaaaagtttaaaactaggaagtatatctgagttcttgtctagggctttacagtctcctg 1972
| |||| | || |||| ||||| || |||||||| || || || ||||| ||| || |
Sbjct: 610 ttaaaactctacaacttggaagcatctctgagtttttatccagagctttgcagcagccag 669
Query: 1973 agatacttgcggtgcaaaatgcaattgaatatttaaaaataattggagctttggatgaga 2032
|| || |||| |||||||| ||||||||||| || | |||||||| || |||||||
Sbjct: 670 agcctctctcggttcaaaatgctattgaatatttgaagactattggagccttagatgaga 729
Query: 2033 atgagaatctgactattctaggccactatttgacaaagtttccaatggaaccaaaacttg 2092
|||| ||| |||| ||||||| ||| | ||| | | | |||| | ||||| |||||||
Sbjct: 730 atgaaaatttgacagttctagggcacaagttgtcgatgcttcctgtagaacccaaacttg 789
Query: 2093 gcaagatgcttatatttggtgctatcttcaa 2123
|||||||||| || || || |||||||||||
Sbjct: 790 gcaagatgctcattttgggagctatcttcaa 820
>gnl|LJGI|DC598572
Length = 545
Score = 93.7 bits (47), Expect = 7e-18
Identities = 113/135 (83%)
Strand = Plus / Plus
Query: 78 gagtggtttccctaatgatagcatggctgagtggaagcacaagttaacaatgcttttaaa 137
||||| |||||| ||||||| ||| |||||||||||| || ||| ||||| |||||
Sbjct: 377 gagtgatttccccaatgataacattgctgagtggaagaggaaactaagcatgctcttaaa 436
Query: 138 tgacaagagtaagcaagaggaggtctcgagggagaaaaaggataggcgtgattttgagca 197
||||||||||||||| |||| | | ||| |||||||||||||||||| |||||| |||||
Sbjct: 437 tgacaagagtaagcaggaggtgatttcgcgggagaaaaaggataggcatgatttcgagca 496
Query: 198 actagccgctttggc 212
| |||| | ||||||
Sbjct: 497 aatagcggttttggc 511
>gnl|LJGI|AV407363 homologue to UniRef100_A7QXE2 Cluster: Chromosome undetermined
scaffold_221, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_221, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(12%)
Length = 425
Score = 63.9 bits (32), Expect = 6e-09
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 965 taacccatattattgtggatgaaattcatgagcgtgggattaatgaagattt 1016
|||||||| || |||||||||||||||||||||| || || |||||||||||
Sbjct: 235 taacccatgtttttgtggatgaaattcatgagcgaggcatgaatgaagattt 286