Miyakogusa Predicted Gene

Lj0g3v0325899.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0325899.2 Non Chatacterized Hit- tr|B9RRL9|B9RRL9_RICCO
Splicing factor, putative OS=Ricinus communis
GN=RCOM_,68.42,0.000000004,seg,NULL,CUFF.22153.2
         (513 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81862 weakly similar to UniRef100_Q5SN81 Cluster: Euk...   658   0.0  

>gnl|LJGI|TC81862 weakly similar to UniRef100_Q5SN81 Cluster: Eukaryotic translation
           initiation factor 3 subunit 10-like; n=1; Oryza sativa
           Japonica Group|Rep: Eukaryotic translation initiation
           factor 3 subunit 10-like - Oryza sativa subsp. japonica
           (Rice), partial (5%)
          Length = 1023

 Score =  658 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 174 agaacgagaccaacgaagggaccgtgcgagtgagagcgaaagggaaagggagaaagagag 233
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agaaagagaccaacgaagggaccgtgcgagtgagagcgaaagggaaagggagaaagagag 548

                                                                       
Query: 234 cttgcggcgaagcagaagtagatctgaaagactggttccaagtgagctggatggcagaga 293
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cttgcgacgaagcagaagtagatctgaaagactggttccaagtgagctggatggcagaga 608

                                                                       
Query: 294 cggagagaagagtcgcgatagggactatagaggcaatggaagaaaccaggataaggatta 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cggagagaagagtcgcgatagggactatagaggcaatggaagaaaccaggataaggatta 668

                                                                       
Query: 354 tggagacagagaaagggcgagggaaacaatcgaacgcgatagagaaggcaccaccagata 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tggagacagagaaagggcgagggaaacaatcgaacgcgatagagaaggcaccaccagata 728

                                                                       
Query: 414 tggtagagcggtaatcagatggtcttactggcaatggggccaggcactggaacctcaggt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggtagagcggtaatcagatggtcttactggcaatggggccaggcactggaacctcaggt 788

                                                   
Query: 474 cttgggtttcaaaagtttctcccttctggagtgcatctga 513
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cttgggtttcaaaagtttctcccttctggagtgcatctga 828



 Score =  343 bits (173), Expect = 7e-94
 Identities = 179/181 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatttcgatgaatatgattatttggagaaaacagttgaaaatcctgaactgttgaag 60
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atggattccgatgaatatgactatttggagaaaacagttgaaaatcctgaactgttgaag 225

                                                                       
Query: 61  gagaatcaaaatggtggtgacgcagggggaaaatcagaagagagacaccgccgtagtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gagaatcaaaatggtggtgacgcagggggaaaatcagaagagagacaccgccgtagtagt 285

                                                                       
Query: 121 cggagttccaagcatagggatattgagaaggacgatggttatgacaggcagaaagaacga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cggagttccaagcatagggatattgagaaggacgatggttatgacaggcagaaagaacga 345

            
Query: 181 g 181
           |
Sbjct: 346 g 346