Miyakogusa Predicted Gene
- Lj0g3v0325119.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0325119.1 Non Chatacterized Hit- tr|C0PBP1|C0PBP1_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,47.83,0.00000004,seg,NULL,gene.g25389.t1.1
(298 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW616841 homologue to UniRef100_Q2TFP2 Cluster: Tubulin... 486 e-137
gnl|LJGI|BP037355 homologue to UniRef100_Q2TFP2 Cluster: Tubulin... 422 e-118
gnl|LJGI|TC59576 similar to UniRef100_A7PK46 Cluster: Chromosome... 363 e-100
gnl|LJGI|TC77833 homologue to UniRef100_Q2TFP2 Cluster: Tubulin ... 325 9e-89
gnl|LJGI|BW614646 homologue to UniRef100_Q2TFP2 Cluster: Tubulin... 323 3e-88
gnl|LJGI|TC72252 homologue to UniRef100_Q2TFP2 Cluster: Tubulin ... 323 3e-88
gnl|LJGI|TC63835 homologue to UniRef100_Q2TFP2 Cluster: Tubulin ... 323 3e-88
gnl|LJGI|TC72482 UniRef100_A9PL18 Cluster: Alpha-tubulin; n=2; G... 182 8e-46
gnl|LJGI|TC62930 homologue to UniRef100_A9PL19 Cluster: Alpha-tu... 50 8e-06
>gnl|LJGI|BW616841 homologue to UniRef100_Q2TFP2 Cluster: Tubulin A; n=1; Glycine
max|Rep: Tubulin A - Glycine max (Soybean), partial
(15%)
Length = 446
Score = 486 bits (245), Expect = e-137
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 1 atggcacgcgcgatctggttgagtatgtgcgttaccggtgtagtgtcctccggaaaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atggcacgcgcgatctggttgagtatgtgcgttaccggtgtagtgtcctccggaaaagtt 237
Query: 61 gttggcggcgtcttccttgccggagatgagttgttcggggtggaagagttggcggtaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gttggcggcgtcttccttgccggagatgagttgttcggggtggaagagttggcggtaggt 177
Query: 121 gccggcacagacttcgttgatgacggtgggttcaagatcgacgaagacggcgcgtgggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gccggcacagacttcgttgatgacggtgggttcaagatcgacgaagacggcgcgtgggac 117
Query: 181 gtgcttgccggaaccggtttcgctgaagaaggtgttgaaggcgtcgtgagtgacgacggc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 116 gtgcttgccggaaccggtttcgctgaagaaggtgttgaaggcgtcgtgagcgacgacggc 57
Query: 241 gaaggagga 249
|||||||||
Sbjct: 56 gaaggagga 48
>gnl|LJGI|BP037355 homologue to UniRef100_Q2TFP2 Cluster: Tubulin A; n=1; Glycine
max|Rep: Tubulin A - Glycine max (Soybean), partial
(14%)
Length = 422
Score = 422 bits (213), Expect = e-118
Identities = 246/258 (95%), Gaps = 8/258 (3%)
Strand = Plus / Minus
Query: 1 atggcacgcgcgatctggttgagtatgtgcgttaccggtgtagtgtcctccggaaaagtt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 367 atggcacgcgcgatctggttgagtatgtgcgttaccggtgcagtgtcctccggccaagtt 308
Query: 61 gttggcggcgtcttccttgccggagatgagttgttcggggtggaagagttggcggtaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gttggcggcgtcttccttgccggagatgagttgttcggggtggaagagttggcggtaggt 248
Query: 121 gccggcacagacttcgttgatgacggtgggttcaagatcgacgaagacggcgcgtgggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccggcacagacttcgttgatgacggtgggttcaagatcgacgaagacggcgcgtgggac 188
Query: 181 gtgcttgccggaaccggtttcgctgaagaaggtgttgaaggcgtcgtgagtgacgacggc 240
||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 187 gtgcttgccggaaccggtttcgc--------gtgttgaaggcgtcgtgagcgacgacggc 136
Query: 241 gaaggaggagtcggaagg 258
||||||||||||||||||
Sbjct: 135 gaaggaggagtcggaagg 118
>gnl|LJGI|TC59576 similar to UniRef100_A7PK46 Cluster: Chromosome chr15 scaffold_19,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_19, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 803
Score = 363 bits (183), Expect = e-100
Identities = 213/224 (95%), Gaps = 8/224 (3%)
Strand = Plus / Minus
Query: 35 ccggtgtagtgtcctccggaaaagttgttggcggcgtcttccttgccggagatgagttgt 94
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ccggtgcagtgtcctccggcaaagttgttggcggcgtcttccttgccggagatgagttgt 172
Query: 95 tcggggtggaagagttggcggtaggtgccggcacagacttcgttgatgacggtgggttca 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tcggggtggaagagttggcggtaggtgccggcacagacttcgttgatgacggtgggttca 112
Query: 155 agatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcgctgaagaaggtg 214
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 111 agatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcgc--------gtg 60
Query: 215 ttgaaggcgtcgtgagtgacgacggcgaaggaggagtcggaagg 258
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 59 ttgaaggcgtcgtgagcgacgacggcgaaggaggagtcggaagg 16
>gnl|LJGI|TC77833 homologue to UniRef100_Q2TFP2 Cluster: Tubulin A; n=1; Glycine
max|Rep: Tubulin A - Glycine max (Soybean), partial
(24%)
Length = 603
Score = 325 bits (164), Expect = 9e-89
Identities = 212/228 (92%)
Strand = Plus / Minus
Query: 31 gttaccggtgtagtgtcctccggaaaagttgttggcggcgtcttccttgccggagatgag 90
||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct: 547 gttaccggtgtagtggcctctggcgaagttgttggcggcgtcttccttgccggagatgag 488
Query: 91 ttgttcggggtggaagagttggcggtaggtgccggcacagacttcgttgatgacggtggg 150
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 487 ttgttcggggtggaagagttggcggtaggtgccggcgcggacttcgtcgatgacggtggg 428
Query: 151 ttcaagatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcgctgaagaa 210
||| ||||| | |||||||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 427 ttcgagatctatgaagacggcgcgagggacgtgtttaccggagccggtttcgctgaagaa 368
Query: 211 ggtgttgaaggcgtcgtgagtgacgacggcgaaggaggagtcggaagg 258
|||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 367 ggtgttgaaggcgtcgtgagcgacgacgccgaaggaggagtcggaagg 320
>gnl|LJGI|BW614646 homologue to UniRef100_Q2TFP2 Cluster: Tubulin A; n=1; Glycine
max|Rep: Tubulin A - Glycine max (Soybean), partial
(28%)
Length = 540
Score = 323 bits (163), Expect = 3e-88
Identities = 208/223 (93%)
Strand = Plus / Minus
Query: 36 cggtgtagtgtcctccggaaaagttgttggcggcgtcttccttgccggagatgagttgtt 95
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cggtgtagtggcctctggcgaagttgttggcggcgtcttccttgccggagatgagttgtt 432
Query: 96 cggggtggaagagttggcggtaggtgccggcacagacttcgttgatgacggtgggttcaa 155
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct: 431 cggggtggaagagttggcggtaggtgccggcgcggacttcgtcgatgacggtgggttcga 372
Query: 156 gatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcgctgaagaaggtgt 215
|||| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct: 371 gatctacgaagacggcgcgagggacgtgtttaccggagccggtttcgctgaagaaggtgt 312
Query: 216 tgaaggcgtcgtgagtgacgacggcgaaggaggagtcggaagg 258
||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 311 tgaaggcgtcgtgagcgacgacgccgaaggaggagtcggaagg 269
>gnl|LJGI|TC72252 homologue to UniRef100_Q2TFP2 Cluster: Tubulin A; n=1; Glycine
max|Rep: Tubulin A - Glycine max (Soybean), partial
(36%)
Length = 643
Score = 323 bits (163), Expect = 3e-88
Identities = 208/223 (93%)
Strand = Plus / Minus
Query: 36 cggtgtagtgtcctccggaaaagttgttggcggcgtcttccttgccggagatgagttgtt 95
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cggtgtagtggcctctggcgaagttgttggcggcgtcttccttgccggagatgagttgtt 424
Query: 96 cggggtggaagagttggcggtaggtgccggcacagacttcgttgatgacggtgggttcaa 155
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct: 423 cggggtggaagagttggcggtaggtgccggcgcggacttcgtcgatgacggtgggttcga 364
Query: 156 gatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcgctgaagaaggtgt 215
|||| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct: 363 gatctacgaagacggcgcgagggacgtgtttaccggagccggtttcgctgaagaaggtgt 304
Query: 216 tgaaggcgtcgtgagtgacgacggcgaaggaggagtcggaagg 258
||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 303 tgaaggcgtcgtgagcgacgacgccgaaggaggagtcggaagg 261
>gnl|LJGI|TC63835 homologue to UniRef100_Q2TFP2 Cluster: Tubulin A; n=1; Glycine
max|Rep: Tubulin A - Glycine max (Soybean), complete
Length = 1711
Score = 323 bits (163), Expect = 3e-88
Identities = 208/223 (93%)
Strand = Plus / Minus
Query: 36 cggtgtagtgtcctccggaaaagttgttggcggcgtcttccttgccggagatgagttgtt 95
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cggtgtagtggcctctggcgaagttgttggcggcgtcttccttgccggagatgagttgtt 373
Query: 96 cggggtggaagagttggcggtaggtgccggcacagacttcgttgatgacggtgggttcaa 155
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct: 372 cggggtggaagagttggcggtaggtgccggcgcggacttcgtcgatgacggtgggttcga 313
Query: 156 gatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcgctgaagaaggtgt 215
|||| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct: 312 gatctacgaagacggcgcgagggacgtgtttaccggagccggtttcgctgaagaaggtgt 253
Query: 216 tgaaggcgtcgtgagtgacgacggcgaaggaggagtcggaagg 258
||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 252 tgaaggcgtcgtgagcgacgacgccgaaggaggagtcggaagg 210
>gnl|LJGI|TC72482 UniRef100_A9PL18 Cluster: Alpha-tubulin; n=2; Gossypium
hirsutum|Rep: Alpha-tubulin - Gossypium hirsutum (Upland
cotton) (Gossypium mexicanum), partial (27%)
Length = 490
Score = 182 bits (92), Expect = 8e-46
Identities = 152/172 (88%)
Strand = Plus / Minus
Query: 56 aagttgttggcggcgtcttccttgccggagatgagttgttcggggtggaagagttggcgg 115
||||||||||||||||| ||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 438 aagttgttggcggcgtcctccttgccgctgatgagttgctcagggtggaagagttggcgg 379
Query: 116 taggtgccggcacagacttcgttgatgacggtgggttcaagatcgacgaagacggcgcgt 175
|||| ||||| | || |||| ||||||||| || || ||||| |||||||||||||||
Sbjct: 378 taggcgccggttctcacctcgtcgatgacggttggctccagatccacgaagacggcgcgt 319
Query: 176 gggacgtgcttgccggaaccggtttcgctgaagaaggtgttgaaggcgtcgt 227
|| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaacgtgctttccggcgccggtttcgctgaagaaggtgttgaaggcgtcgt 267
>gnl|LJGI|TC62930 homologue to UniRef100_A9PL19 Cluster: Alpha-tubulin; n=2;
Gossypium hirsutum|Rep: Alpha-tubulin - Gossypium
hirsutum (Upland cotton) (Gossypium mexicanum), complete
Length = 1918
Score = 50.1 bits (25), Expect = 8e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 143 acggtgggttcaagatcgacgaagacggcgcgtgggacgtgcttgccggaaccggtttcg 202
|||||||| |||||||| || ||||| || || ||||| ||||| || | ||| || |||
Sbjct: 456 acggtgggctcaagatccacaaagacagcacgagggacatgctttccagcaccagtctcg 397
Query: 203 ctgaagaaggtgttgaa 219
|||||||| ||||||||
Sbjct: 396 ctgaagaaagtgttgaa 380