Miyakogusa Predicted Gene
- Lj0g3v0324949.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0324949.1 tr|Q9LTR6|Q9LTR6_ARATH Gb|AAF36750.1
OS=Arabidopsis thaliana PE=4 SV=1,30.74,2e-17,coiled-coil,NULL;
DUF1666,Protein of unknown function DUF1666; STRUCTURAL CONSTITUENT OF
RIBOSOME,NU,CUFF.22084.1
(2598 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81035 weakly similar to UniRef100_A7QED6 Cluster: Chr... 1725 0.0
gnl|LJGI|TC61917 400 e-110
gnl|LJGI|TC66004 similar to UniRef100_A7PMW3 Cluster: Chromosome... 56 1e-06
>gnl|LJGI|TC81035 weakly similar to UniRef100_A7QED6 Cluster: Chromosome chr1
scaffold_84, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_84, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (31%)
Length = 1323
Score = 1725 bits (870), Expect = 0.0
Identities = 882/886 (99%)
Strand = Plus / Plus
Query: 1713 aggtcttcttcatctaaaagaccctcttaaatcaatttcaataccaaaatccaccatctc 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggtcttcttcatctaaaagaccctcttaaatcaatttcaataccaaaatccaccatctc 304
Query: 1773 aggtgctaagcctgtaatctctcagaatttgtggccacgcaaagcggcaaagaacatatc 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggtgctaagcctgtaatctctcagaatttgtggccacgcaaagcggcaaagaacatatc 364
Query: 1833 tgacccactgcttaagcttgttcatgacctgcatagagatttggaactggtttatgtcgg 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgacccactgcttaagcttgttcatgacctgcatagagatttggaactggtttatgtcgg 424
Query: 1893 gcaggtttgcctctcctgggaaatcctgtgttggcaacaccagaaagccattgaattgca 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcaggtttgcctctcctgggaaatcctgtgttggcaacaccagaaagccattgaattgca 484
Query: 1953 agagtatgattcacaagggtctcacaggtacaaccatgttgctggtgagtttcaactttt 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agagtatgattcacaagggtctcacaggtacaaccatgttgctggtgagtttcaactttt 544
Query: 2013 tcaagtcctggtgcagagattcatagagaatgaaccatttcaaggtggccctaggattca 2072
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 545 tcaagtcctggtgcagagattcatagagaatgaaccatttcaaggtggccttaggattca 604
Query: 2073 gaattatgtcaagaaccgttgcgtgattcggaacctgctccaagttccagccattaaaga 2132
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 605 gaattatgtcaagaaccgttgcgtgattcggaacctgctccaggttccagccattaaaga 664
Query: 2133 tgatagtaaagggggtgaggaggaggatgctattgcaagtggaaggttagaagatatcat 2192
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 665 tgatagtaaagggggtgaggaggaggatgctgttgcaagtggaaggttagaagatatcat 724
Query: 2193 caaggaatccatgagagtgttctgggaatttgtccgcgcagataaagattatgggaatgt 2252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 caaggaatccatgagagtgttctgggaatttgtccgcgcagataaagattatgggaatgt 784
Query: 2253 ggttcttaaagttcctaagcatattggaactgatctcaaagacccggcaatttcaaatct 2312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ggttcttaaagttcctaagcatattggaactgatctcaaagacccggcaatttcaaatct 844
Query: 2313 tctcgtggatattcgaacgcaattacaaaagaaggagaaaaagctcaaggacattgtgag 2372
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 845 tctcgtggatattcgaacgcaattacaaaagaaggagaaaaagctcaaggacgttgtgag 904
Query: 2373 aattgggaattgcatagtgaagaagttccaaaagcaccatgaggatccacttgatcatga 2432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 aattgggaattgcatagtgaagaagttccaaaagcaccatgaggatccacttgatcatga 964
Query: 2433 gcagctagtagctcaggttgggttgagattgatttcaagggtggtaaacgtgtcaaagtt 2492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gcagctagtagctcaggttgggttgagattgatttcaagggtggtaaacgtgtcaaagtt 1024
Query: 2493 gagaaaagaacagataatatggtgccatgaaaaattgcaccgaatcaaatttttgagcag 2552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 gagaaaagaacagataatatggtgccatgaaaaattgcaccgaatcaaatttttgagcag 1084
Query: 2553 gaagatcgtccaggttgaaccttcttttttgctgtttccatgttga 2598
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gaagatcgtccaggttgaaccttcttttttgctgtttccatgttga 1130
>gnl|LJGI|TC61917
Length = 789
Score = 400 bits (202), Expect = e-110
Identities = 289/317 (91%), Gaps = 2/317 (0%)
Strand = Plus / Plus
Query: 1143 aagtggtctaatctggggcatcagtgacaaaatcgatgattcaatttcataccagtttct 1202
||||| |||||||||||||| |||||| ||||| ||||||||||||||||| || || ||
Sbjct: 321 aagtgatctaatctggggcaacagtgataaaattgatgattcaatttcatatcaattcct 380
Query: 1203 gggtggtaaaattgtcggtgaaggatttgagcctgagattctgaagcttattatgagaga 1262
|||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gggtggcaaaattttcggtgaaggatttgaacctgagattctgaagcttattatgagaga 440
Query: 1263 ggaaagaccagaggatatggatgaaaagcaatcttcacttgatagaaatttttcagaatt 1322
||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 441 agaaagaccagaggatctggatgaaaagcaatcttcatgtgatagaaaattttcagaatt 500
Query: 1323 tggatttcatg--gtgtttattctgaagatgggtatattgaaatagaacctggcatgaag 1380
|||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct: 501 tggagttcatggtgtgtttattctgaagatgagtatattgaaatggaacctggcatgatg 560
Query: 1381 agctttaagtcattgaatgtgcatgattttggtgatgtaccagaatctgatgagcaagat 1440
| |||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 561 cgttttaagtctttgaatgtgcatggttttggtgatgtatcagaacctgatgagcaagat 620
Query: 1441 gaggatgattttgaatg 1457
|||||||||||| ||||
Sbjct: 621 gaggatgattttcaatg 637
Score = 135 bits (68), Expect = 2e-30
Identities = 90/96 (93%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 935 tttcagagcttgattcagagaaagacagtgtagcagctcaagaagaagaagtggaatctg 994
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 196 tttcagagcttgattcagagaaagtcagtgtagcagctcaagaagaagaagaggaatctg 255
Query: 995 ttcaagagcagttttca-ctcccttccaccactatt 1029
|||||||||| |||||| | ||||||||| ||||||
Sbjct: 256 ttcaagagcacttttcatcccccttccactactatt 291
>gnl|LJGI|TC66004 similar to UniRef100_A7PMW3 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 763
Score = 56.0 bits (28), Expect = 1e-06
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2383 tgcatagtgaagaagttccaaaagcaccatga 2414
|||||| |||||||||||||||||||||||||
Sbjct: 427 tgcatattgaagaagttccaaaagcaccatga 458