Miyakogusa Predicted Gene
- Lj0g3v0323809.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0323809.2 tr|Q94IH6|Q94IH6_COPJA CjMDR1 OS=Coptis japonica
GN=Cjmdr1 PE=2 SV=1,32.42,2e-16,ABC transporter transmembrane
region,ABC transporter, transmembrane domain, type 1; P-loop
containin,CUFF.21992.2
(1164 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS361887 similar to UniRef100_A7Q0Z8 Cluster: Chromosom... 111 1e-23
gnl|LJGI|TC65032 similar to UniRef100_A7NVZ8 Cluster: Chromosome... 56 5e-07
gnl|LJGI|TC62656 similar to UniRef100_A7Q0Z8 Cluster: Chromosome... 56 5e-07
gnl|LJGI|TC79412 similar to UniRef100_A7NVZ8 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|FS361887 similar to UniRef100_A7Q0Z8 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 748
Score = 111 bits (56), Expect = 1e-23
Identities = 131/156 (83%)
Strand = Plus / Minus
Query: 1 atggttggagagcatggaattcagctttctggaggtcaaaagcaaagaattgccatagca 60
|||||||| |||||||||| |||| | ||||| || |||||||| | ||||| || |||
Sbjct: 282 atggttggtgagcatggaactcagttatctggtggacaaaagcagcgcattgcgattgca 223
Query: 61 agagcaattatgagagatccaagaattctactcctagatgaagctacaagtgcacttgat 120
|||||||| | | |||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 222 agagcaatcctaaaagatccaagaattctacttctagatgaagcaacaagcgcacttgat 163
Query: 121 gcagaatctgaaagagtagtacaagagacactagac 156
| || |||||||| ||||| |||||| | ||||||
Sbjct: 162 tcggagtctgaaagggtagtgcaagaggctctagac 127
>gnl|LJGI|TC65032 similar to UniRef100_A7NVZ8 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 935
Score = 56.0 bits (28), Expect = 5e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 94 ctagatgaagctacaagtgcacttgatgcagaatctgaaa 133
||||||||||| ||||||||||||||||| || |||||||
Sbjct: 482 ctagatgaagccacaagtgcacttgatgccgagtctgaaa 521
>gnl|LJGI|TC62656 similar to UniRef100_A7Q0Z8 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 1320
Score = 56.0 bits (28), Expect = 5e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 91 ctcctagatgaagctacaagtgcacttgatgcagaatctgaaagagtagtacaaga 146
||||||||||| || ||||||||| | ||||||||||| |||||||| || |||||
Sbjct: 935 ctcctagatgaggccacaagtgcattagatgcagaatcagaaagagttgttcaaga 990
>gnl|LJGI|TC79412 similar to UniRef100_A7NVZ8 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 603
Score = 54.0 bits (27), Expect = 2e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 89 tactcctagatgaagctacaagtgcacttgatgcagaatctga 131
|||| ||||||||||| ||||||||||||||||| || |||||
Sbjct: 470 tactactagatgaagccacaagtgcacttgatgccgagtctga 512