Miyakogusa Predicted Gene

Lj0g3v0322639.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0322639.1 tr|I7A7R5|I7A7R5_PSEST EAL/GGDEF
domain-containing protein OS=Pseudomonas stutzeri DSM 10701 PE=4
SV,35.38,5.6, ,CUFF.21896.1
         (277 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69081 weakly similar to UniRef100_Q287V7 Cluster: Zin...    98   3e-20
gnl|LJGI|TC75170 weakly similar to UniRef100_Q9GTH4 Cluster: Nuc...    90   8e-18
gnl|LJGI|TC70095 similar to UniRef100_A7Q722 Cluster: Chromosome...    56   1e-07

>gnl|LJGI|TC69081 weakly similar to UniRef100_Q287V7 Cluster: Zinc knuckle family
           protein; n=1; Olimarabidopsis pumila|Rep: Zinc knuckle
           family protein - Olimarabidopsis pumila (Dwarf rocket)
           (Arabidopsis pumila), partial (7%)
          Length = 635

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 103/120 (85%), Gaps = 2/120 (1%)
 Strand = Plus / Plus

                                                                       
Query: 39  aaatttcccaacccaaatcttcagaaacgaatgcaaggagacactcaagtgtcatcactc 98
           |||||||||||||||||  ||||||||||||||||||||||||||   |  |||    ||
Sbjct: 259 aaatttcccaacccaaacattcagaaacgaatgcaaggagacactt--gcttcaagtgtc 316

                                                                       
Query: 99  atcaacaaggtcattggagttggttttttcctttgaactcccccaacatgaagcccctct 158
           | |||||||||||||||||||||||||  ||||||||||| ||||||| ||| |||||||
Sbjct: 317 accaacaaggtcattggagttggttttgccctttgaactctcccaacaagaaccccctct 376


>gnl|LJGI|TC75170 weakly similar to UniRef100_Q9GTH4 Cluster: Nuclear receptor
           NHR-43; n=2; Caenorhabditis elegans|Rep: Nuclear
           receptor NHR-43 - Caenorhabditis elegans, partial (4%)
          Length = 623

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                       
Query: 101 caacaaggtcattggagttggttttttcctttgaactcccccaacatgaagcccctctta 160
           |||||||||||||||||||||||||  |||||||||||||||||||  |||||||||| |
Sbjct: 370 caacaaggtcattggagttggttttgccctttgaactcccccaacaacaagcccctctca 429

                                  
Query: 161 cca---tcacactcacccactca 180
            ||   |||||||||||||||||
Sbjct: 430 tcatcttcacactcacccactca 452


>gnl|LJGI|TC70095 similar to UniRef100_A7Q722 Cluster: Chromosome chr5 scaffold_58,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_58, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 779

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 226 ttcccctgccaaattgaagagtacttcgcctccgcgccctcccccttc 273
           |||||||||||||||||||||  | | |||||| ||||||||||||||
Sbjct: 224 ttcccctgccaaattgaagagccccttgcctcctcgccctcccccttc 271