Miyakogusa Predicted Gene

Lj0g3v0319489.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0319489.2 Non Chatacterized Hit- tr|B9S4Y0|B9S4Y0_RICCO DNA
binding protein, putative OS=Ricinus communis
GN=R,47.13,2e-16,Ribonuclease H-like,Ribonuclease H-like domain;
DUF659,Domain of unknown function DUF659; zf-BED,Zin,CUFF.21647.2
         (2241 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62492 similar to UniRef100_A7Q8E6 Cluster: Chromosome...   454   e-126
gnl|LJGI|BP085269                                                     119   8e-26

>gnl|LJGI|TC62492 similar to UniRef100_A7Q8E6 Cluster: Chromosome chr5 scaffold_64,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr5 scaffold_64, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (12%)
          Length = 738

 Score =  454 bits (229), Expect = e-126
 Identities = 352/393 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1835 catccagtgtgatgccctgcaagagaaacaagattccttttgaacaattaaccaatacaa 1894
            |||||||||||||| |||||||||||||| ||||||||||||||||| |||  |||||||
Sbjct: 3    catccagtgtgatgtcctgcaagagaaaccagattccttttgaacaaataatgaatacaa 62

                                                                        
Query: 1895 ggaattttatagagcgccaacatcttactgatcttgtctttgttcattacaacttacgat 1954
            |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 63   ggaattatatagagcgccaacatcttacggatcttgtctttgttcattccaacttacgat 122

                                                                        
Query: 1955 taagacaaatgtatatgagtaaagaacaggattctaaggatcccctgtcatttgacagca 2014
            |||||||||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||
Sbjct: 123  taagacaaatttatatgagtaaagaacaagattctagggatcccctgtcatttaatagca 182

                                                                        
Query: 2015 ctagtaacgttgaagactggatcaggccaatggaattttactcagaagagtatgggaact 2074
             | |||| |||||||||||||||||||||| ||| ||  | | |||||||||||| ||||
Sbjct: 183  ttggtaatgttgaagactggatcaggccaagggatttggagttagaagagtatggtaact 242

                                                                        
Query: 2075 cggattggatggcactggatccatcttctgttaacacaatgcttttaaggcctttaaatg 2134
            |||| ||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||
Sbjct: 243  cggactggatggaactggatccatcttctgttaacacaatgcttttacagcctttgaatg 302

                                                                        
Query: 2135 acgaaactgaagaattgggtgaagggtttgatgatcttgaaattttcagttatctgaaag 2194
            | ||| ||||||| |||||||||||||||||||||| |||||||||||||  || | |||
Sbjct: 303  atgaagctgaagagttgggtgaagggtttgatgatcatgaaattttcagtagtcaggaag 362

                                             
Query: 2195 atgatgagaatgaaagcactggagacaagttgg 2227
            | |||||  |||||| ||||||||| |||||||
Sbjct: 363  acgatgaagatgaaaacactggagataagttgg 395


>gnl|LJGI|BP085269 
          Length = 363

 Score =  119 bits (60), Expect = 8e-26
 Identities = 63/64 (98%)
 Strand = Plus / Minus

                                                                        
Query: 2176 attttcagttatctgaaagatgatgagaatgaaagcactggagacaagttggtaaaccct 2235
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363  attttcagttatctgaaagatgatgagaatgaaagcactggagaccagttggtaaaccct 304

                
Query: 2236 tagc 2239
            ||||
Sbjct: 303  tagc 300