Miyakogusa Predicted Gene

Lj0g3v0318179.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0318179.1 Non Chatacterized Hit- tr|K3XMI8|K3XMI8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si002916,35.67,5e-18,zf-HIT,Zinc finger, HIT-type; ZF_HIT,Zinc
finger, HIT-type; SUBFAMILY NOT NAMED,NULL; THYROID
RECEPT,CUFF.21528.1
         (402 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66044 similar to UniRef100_A7QKR1 Cluster: Chromosome...   797   0.0  

>gnl|LJGI|TC66044 similar to UniRef100_A7QKR1 Cluster: Chromosome undetermined
           scaffold_114, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_114,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (78%)
          Length = 798

 Score =  797 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtcctcgacaatgtcaagtttgcaacctagttcagtccaaatacaagtgcgcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atgggtcctcgacaatgtcaagtttgcaacctagttcagtccaaatacaagtgcgcttca 233

                                                                       
Query: 61  tgttatttaccttattgttctctggtttgcttcaagaagcacaaagaatctccatgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tgttatttaccttattgttctctggtttgcttcaagaagcacaaagaatctccatgtgtc 293

                                                                       
Query: 121 aagccaccgtcttcagaagtcaaaacatctgctgctttggaatcacctgtaaaaaagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagccaccgtcttcagaagtcaaaacatctgctgctttggaatcacctgtaaaaaagcca 353

                                                                       
Query: 181 atagtcattgatgaaccaattgaagtgttgcaaaaattccaactggaggctatagcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atagtcattgatgaaccaattgaagtgttgcaaaaattccaactggaggctatagcctct 413

                                                                       
Query: 241 tccagtgagattcgcgatgctttgaatgatcaagcgcttcaagaactaatttgccgcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tccagtgagattcgcgatgctttgaatgatcaagcgcttcaagaactaatttgccgcatt 473

                                                                       
Query: 301 gattgttccccaaatgcagagaatgaatttgataaagctatggcggaggaggcatttcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gattgttccccaaatgcagagaatgaatttgataaagctatggcggaggaggcatttcgc 533

                                                     
Query: 361 ttgttcacagacaagattttatcaaccatcaacccctaactg 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttgttcacagacaagattttatcaaccatcaacccctaactg 575