Miyakogusa Predicted Gene

Lj0g3v0317569.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0317569.2 Non Chatacterized Hit- tr|I1JAU5|I1JAU5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5853
PE=,92.49,0,Voltage_CLC,Chloride channel, voltage gated;
CBS,Cystathionine beta-synthase, core; CLCHANNEL,Chlori,CUFF.22326.2
         (1041 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78778 homologue to UniRef100_P92943 Cluster: Chloride...   480   e-135

>gnl|LJGI|TC78778 homologue to UniRef100_P92943 Cluster: Chloride channel protein
            CLC-d; n=1; Arabidopsis thaliana|Rep: Chloride channel
            protein CLC-d - Arabidopsis thaliana (Mouse-ear cress),
            partial (5%)
          Length = 501

 Score =  480 bits (242), Expect = e-135
 Identities = 262/269 (97%), Gaps = 5/269 (1%)
 Strand = Plus / Plus

                                                                        
Query: 773  cagaagacatgtctttgacaaaggtatacaatcttttccgccaacttggtttgagacatt 832
            ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 1    cagaagacatgtctttgacaaaggtataccatcttttccnccaacttggtttgagacatt 60

                                                                        
Query: 833  tatttgttgtacctcgtccatcgcgtgtgcttggtttgataaccagaaaagatttgttga 892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tatttgttgtacctcgtccatcgcgtgtgcttggtttgataaccagaaaagatttgttga 120

                                                                        
Query: 893  ttgaggacacagatgcgaatacattagagcttcaggcaactagtgtaagagttcggcatc 952
            ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||
Sbjct: 121  ttgaggacacagatgcgaatacattagagcttcaggcaactagt-----agttcggcatc 175

                                                                        
Query: 953  caggtaaaagattgatggcaaggaatgcagatgtggagagccctctgctaaatggtcttc 1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176  caggtaaaagattgatggcaaggaatgcagatgtggagagccctctgctaaatggtcttc 235

                                         
Query: 1013 tggttcagaatcagatacctgactaatac 1041
            |||||||||||||||||||||||||||||
Sbjct: 236  tggttcagaatcagatacctgactaatac 264