Miyakogusa Predicted Gene
- Lj0g3v0315789.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0315789.1 Non Chatacterized Hit- tr|J3MV70|J3MV70_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB08G3,31.97,0.0000000000006,SUBFAMILY NOT NAMED,NULL;
SERINE/THREONINE-PROTEIN KINASE RIO,NULL; zf-C2H2,Zinc finger, C2H2;
ZINC_,CUFF.21333.1
(1728 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO025534 similar to UniRef100_Q5UDB6 Cluster: INDETERMI... 680 0.0
gnl|LJGI|BP033273 similar to UniRef100_A7QBW4 Cluster: Chromosom... 654 0.0
gnl|LJGI|TC66141 similar to UniRef100_Q5UDB7 Cluster: INDETERMIN... 190 2e-47
gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc fi... 135 1e-30
gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 131 2e-29
gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromos... 121 2e-26
gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 115 9e-25
gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc fing... 100 6e-20
gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromoso... 86 8e-16
gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosom... 84 3e-15
gnl|LJGI|TC61639 similar to UniRef100_Q2HVE6 Cluster: Zinc finge... 76 8e-13
gnl|LJGI|TC71214 similar to UniRef100_A7QBW4 Cluster: Chromosome... 56 8e-07
>gnl|LJGI|GO025534 similar to UniRef100_Q5UDB6 Cluster: INDETERMINATE-related protein 9;
n=1; Zea mays|Rep: INDETERMINATE-related protein 9 - Zea
mays (Maize), partial (4%)
Length = 348
Score = 680 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Plus
Query: 859 caagaccttcaatctcatcatcaccaaggacaattctcgaacaagcagctgcatggtctt 918
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2 caagaccttcaatctcatcatcaccaagggcaattctcgaacaagcagctgcatggtctt 61
Query: 919 atgcagctccctgattttcaaggtcccaccaccaacaacaccagtacttctgcaccatca 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atgcagctccctgattttcaaggtcccaccaccaacaacaccagtacttctgcaccatca 121
Query: 979 tcagtttctgctaattcagctgcaaactttttcaacctcagcttcttcccaaatagtaat 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tcagtttctgctaattcagctgcaaactttttcaacctcagcttcttcccaaatagtaat 181
Query: 1039 agcaacgacagcaccatccctgatcagttcaacagtataactgcaggaacaacactctac 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agcaacgacagcaccatccctgatcagttcaacagtataactgcaggaacaacactctac 241
Query: 1099 acaaatagccctggcagtagcaatcatcaccaagttggttcagctttgtcttcaatcttt 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acaaatagccctggcagtagcaatcatcaccaagttggttcagctttgtcttcaatcttt 301
Query: 1159 ggcaattcatcactgcaacaagagaacaacatgcccccgcacatgtc 1205
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggcaattcatcactgcaacaagagaacaacatgcccccgcacatgtc 348
>gnl|LJGI|BP033273 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 511
Score = 654 bits (330), Expect = 0.0
Identities = 334/336 (99%)
Strand = Plus / Minus
Query: 1393 aatgaccaccaacatcatctacatgggataatgaactctcttgcgaaccgaaacaacaat 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 511 aatgaccaccaacatcatctacatgggataatgaactctcttgcgaaccgaaacaacnat 452
Query: 1453 tcgatgtttggccatgtgaaagggaatgaaaacaataatgtttctcattttcacatcatg 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcgatgtttggccatgtgaaagggaatgaaaacaataatgtttctcattttcacatcatg 392
Query: 1513 gaggaggctaaaagattgtcatcacaaaatctgggtggtgtgtgctttggaggatctgat 1572
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 gaggaggctaaaagattgtcatcacnaaatctgggtggtgtgtgctttggaggatctgat 332
Query: 1573 aagttgactttggactttcttggtgttaatggaggaattgtgaggaacatgagcggtggg 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagttgactttggactttcttggtgttaatggaggaattgtgaggaacatgagcggtggg 272
Query: 1633 ttttcacaaagagagcaactagactccattttggatcctaaacttgaatcaacacaagca 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttttcacaaagagagcaactagactccattttggatcctaaacttgaatcaacacaagca 212
Query: 1693 aatcaacaatttggaagctcatcattgcaataataa 1728
||||||||||||||||||||||||||||||||||||
Sbjct: 211 aatcaacaatttggaagctcatcattgcaataataa 176
>gnl|LJGI|TC66141 similar to UniRef100_Q5UDB7 Cluster: INDETERMINATE-related protein
7; n=1; Zea mays|Rep: INDETERMINATE-related protein 7 -
Zea mays (Maize), partial (9%)
Length = 725
Score = 190 bits (96), Expect = 2e-47
Identities = 111/116 (95%)
Strand = Plus / Plus
Query: 130 caacctggaacaccatatccagattctgaggtgatagcactatctcccaagacactaatg 189
||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||
Sbjct: 606 caacctggaacaccaaatccagatgcagaggtgatagcactatctcccaagaccctaatg 665
Query: 190 gcaacaaacaggttcatatgtgaggtatgcaacaaagggttccaaagggagcaaaa 245
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 666 gcaacaaacaggttcatatgtgaggtgtgcaacaaagggttccaaagggagcaaaa 721
>gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (16%)
Length = 418
Score = 135 bits (68), Expect = 1e-30
Identities = 104/116 (89%)
Strand = Plus / Plus
Query: 415 aagcacggtgagaagaagtggaagtgtgaaaagtgctctaagaagtatgctgttcaatca 474
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 15 aagcatggtgagaagaagtggaaatgtgaaaagtgctccaagaagtatgcagttcaatca 74
Query: 475 gattggaaagcacattctaagacttgtggtacaagagagtatagatgtgactgtgg 530
|| |||||||| || || || || |||||||||||||| || ||||||||||||||
Sbjct: 75 gactggaaagctcactccaaaacctgtggtacaagagaatacagatgtgactgtgg 130
>gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 951
Score = 131 bits (66), Expect = 2e-29
Identities = 216/266 (81%)
Strand = Plus / Plus
Query: 340 gaacccacttgtgtccaccatgacccttcacgggctcttggagacctcactgggatcaag 399
||||| || |||||||||||||||||||| || || | || || ||||| || || ||
Sbjct: 410 gaaccaacgtgtgtccaccatgacccttctcgagcgttgggtgatctcaccggaattaaa 469
Query: 400 aagcacttctctcggaagcacggtgagaagaagtggaagtgtgaaaagtgctctaagaag 459
|||||||||| | ||||||||||||||||||||||| || || || ||||| |||||
Sbjct: 470 aagcacttctgcagaaagcacggtgagaagaagtggaaatgcgagaaatgctccaagaaa 529
Query: 460 tatgctgttcaatcagattggaaagcacattctaagacttgtggtacaagagagtataga 519
||||| |||||||| ||||||||||| || || ||| ||| ||||| |||||||||| |
Sbjct: 530 tatgcagttcaatctgattggaaagctcactccaaggtttgcggtaccagagagtataaa 589
Query: 520 tgtgactgtggcactctcttctccaggcgtgacagttttattactcatagagccttttgt 579
|||||||| ||||| | || || ||| | || || || |||||||||||||| |||||
Sbjct: 590 tgtgactgcggcacggtgttttcgaggagggatagcttcattactcatagagctttttgc 649
Query: 580 gatgcgttagcacatgagagtgcaag 605
|||||||| ||| | |||||| ||||
Sbjct: 650 gatgcgttggcagaggagagtacaag 675
>gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 589
Score = 121 bits (61), Expect = 2e-26
Identities = 136/161 (84%)
Strand = Plus / Plus
Query: 421 ggtgagaagaagtggaagtgtgaaaagtgctctaagaagtatgctgttcaatcagattgg 480
||||||||||||||||||||||| |||||||| ||||| || |||||||| || ||||||
Sbjct: 371 ggtgagaagaagtggaagtgtgagaagtgctccaagaaatacgctgttcattccgattgg 430
Query: 481 aaagcacattctaagacttgtggtacaagagagtatagatgtgactgtggcactctcttc 540
|| || ||| | |||| |||||| || |||||||| | |||||||||||||| || |||
Sbjct: 431 aaggcccatgccaagatttgtgggactagagagtacaagtgtgactgtggcacacttttc 490
Query: 541 tccaggcgtgacagttttattactcatagagccttttgtga 581
|||||| ||||| || || ||||||||||| ||||||||
Sbjct: 491 tccaggaaggacagcttcataactcatagagctttttgtga 531
>gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 781
Score = 115 bits (58), Expect = 9e-25
Identities = 151/182 (82%)
Strand = Plus / Plus
Query: 424 gagaagaagtggaagtgtgaaaagtgctctaagaagtatgctgttcaatcagattggaaa 483
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 431 gagaagaagtggaaatgtgacaagtgctctaagaaatatgcggttcaatcggattggaaa 490
Query: 484 gcacattctaagacttgtggtacaagagagtatagatgtgactgtggcactctcttctcc 543
|| || || |||| ||| ||||| |||||||||| ||| || ||||| ||| | || ||
Sbjct: 491 gctcactccaagatttgcggtaccagagagtataaatgcgattgtggaactttgttttca 550
Query: 544 aggcgtgacagttttattactcatagagccttttgtgatgcgttagcacatgagagtgca 603
||| | || || || || || ||||| || |||||||||||||||||| | || ||||||
Sbjct: 551 aggagggatagcttcatcacgcatagggcgttttgtgatgcgttagcagaggaaagtgca 610
Query: 604 ag 605
||
Sbjct: 611 ag 612
>gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc finger, C2H2 type family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: Zinc finger, C2H2 type family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(23%)
Length = 491
Score = 99.6 bits (50), Expect = 6e-20
Identities = 137/166 (82%)
Strand = Plus / Minus
Query: 382 gacctcactgggatcaagaagcacttctctcggaagcacggtgagaagaagtggaagtgt 441
|||||||| || ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 273 gacctcaccggcatcaagaagcacttcagcagaaagcacggtgagaagaagtggaagtgt 214
Query: 442 gaaaagtgctctaagaagtatgctgttcaatcagattggaaagcacattctaagacttgt 501
|| |||||||| ||||| || || || | ||||||||||||||| || | | || ||
Sbjct: 213 gagaagtgctccaagaaatacgcagtcccatcagattggaaagctcacacccaaacatgc 154
Query: 502 ggtacaagagagtatagatgtgactgtggcactctcttctccaggc 547
|| || || ||||| | |||||||||||||| |||||||||||||
Sbjct: 153 ggcaccagggagtacaagtgtgactgtggcaccctcttctccaggc 108
>gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 1231
Score = 85.7 bits (43), Expect = 8e-16
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 382 gacctcactgggatcaagaagcacttctctcggaagcacggtgagaagaagtggaagtgt 441
||||||||||| || ||||||||||||| | |||||||| ||||| || ||||| |||
Sbjct: 706 gacctcactggcattaagaagcacttctgcagaaagcacggcgagaaaaaatggaaatgt 765
Query: 442 gaaaagtgctctaagaagtatgctgttcaatcagattggaaagcaca 488
|| |||||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 766 gacaagtgctccaagaagtacgctgttcaatctgactggagagcaca 812
>gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 618
Score = 83.8 bits (42), Expect = 3e-15
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 508 agagagtatagatgtgactgtggcactctcttctccaggcgtgacagttttattactcat 567
||||| ||||||||||| |||||||| |||||||| |||||||| ||||| || ||||||
Sbjct: 287 agagaatatagatgtgattgtggcaccctcttctcaaggcgtgatagtttcatcactcat 346
Query: 568 agagccttttgtgatgcgttagcacatgagagtgcaag 605
|| ||||| |||||||| ||| ||| || ||||||||
Sbjct: 347 agggccttctgtgatgccctagtacaagaaagtgcaag 384
>gnl|LJGI|TC61639 similar to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (17%)
Length = 805
Score = 75.8 bits (38), Expect = 8e-13
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 187 atggcaacaaacaggttcatatgtgaggtatgcaacaaagggttccaaagggagcaaaat 246
|||||||||||||||||| |||||||| | ||||||||||| |||||||| || || |||
Sbjct: 698 atggcaacaaacaggttcttatgtgagatctgcaacaaaggattccaaagagatcagaat 757
Query: 247 ttacagctccacagaagaggacacaa 272
| ||||| || |||||||| |||||
Sbjct: 758 cttcagcttcatagaagagggcacaa 783
>gnl|LJGI|TC71214 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 974
Score = 56.0 bits (28), Expect = 8e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1198 cacatgtctgcaactgcattgcttcagaaagcttcacaaatggg 1241
|||||||| || ||||||||||||||||||||| | ||||||||
Sbjct: 220 cacatgtcagccactgcattgcttcagaaagctgctcaaatggg 263