Miyakogusa Predicted Gene
- Lj0g3v0315759.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0315759.1 Non Chatacterized Hit- tr|B7PZE0|B7PZE0_IXOSC
Exosome component, putative OS=Ixodes scapularis
GN=Is,35.4,5e-16,HRDC,Helicase/RNase D C-terminal, HRDC domain;
HRDC-like,HRDC-like; POLYMYOSITIS/SCLERODERMA AUTOANT,CUFF.21330.1
(1395 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64911 similar to UniRef100_A9LLI7 Cluster: RRP6-like ... 1679 0.0
gnl|LJGI|AV779026 139 5e-32
>gnl|LJGI|TC64911 similar to UniRef100_A9LLI7 Cluster: RRP6-like protein 2; n=1;
Arabidopsis thaliana|Rep: RRP6-like protein 2 -
Arabidopsis thaliana (Mouse-ear cress), partial (8%)
Length = 1097
Score = 1679 bits (847), Expect = 0.0
Identities = 847/847 (100%)
Strand = Plus / Plus
Query: 549 aaaacttaagtccaatagcctcacatctgagctcccaagggacagtctcactgtttctga 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaacttaagtccaatagcctcacatctgagctcccaagggacagtctcactgtttctga 60
Query: 609 gcagaataaggatgctaatactggtgcactctctacgttagagggaaatggagcaacagt 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcagaataaggatgctaatactggtgcactctctacgttagagggaaatggagcaacagt 120
Query: 669 tcaggtgctaaaaaagcctgctggtgcttttggggcactgctgggaaattcagcttcaaa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggtgctaaaaaagcctgctggtgcttttggggcactgctgggaaattcagcttcaaa 180
Query: 729 gaggaagcatgatcctgataagggcatggaagagatcaaactagagcagattagatcttc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggaagcatgatcctgataagggcatggaagagatcaaactagagcagattagatcttc 240
Query: 789 agtcagtcttcccttccattcatttttgggtagcagtgagaagtcaaaacctatagtaga 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtcagtcttcccttccattcatttttgggtagcagtgagaagtcaaaacctatagtaga 300
Query: 849 agctcctagtttagcatcagaaatgtcagacctacacaaacctgcctctgatccagtttc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agctcctagtttagcatcagaaatgtcagacctacacaaacctgcctctgatccagtttc 360
Query: 909 cacctccactctagatgagatcatattgctagactctgatatagctgcggaggatttgga 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cacctccactctagatgagatcatattgctagactctgatatagctgcggaggatttgga 420
Query: 969 gcagagtaacctagaagacccaattgagaacagggagaaccgatctactgtgtcaacttc 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcagagtaacctagaagacccaattgagaacagggagaaccgatctactgtgtcaacttc 480
Query: 1029 cggaacagaggatgaagatgtgccaatgtctctctccgaattgtcatcaaactttcagaa 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cggaacagaggatgaagatgtgccaatgtctctctccgaattgtcatcaaactttcagaa 540
Query: 1089 gtgctttcagtcaaacaatcataatactaaaaccagacagccccagaaaactgatccaag 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgctttcagtcaaacaatcataatactaaaaccagacagccccagaaaactgatccaag 600
Query: 1149 tggcttatttcagttaaagccatttgattataaagcagcaatgaagtttggggaaaatac 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggcttatttcagttaaagccatttgattataaagcagcaatgaagtttggggaaaatac 660
Query: 1209 agcacgtgcatcttcccggagtggtgatggtcatatagagatagaggaggactcaggtgg 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcacgtgcatcttcccggagtggtgatggtcatatagagatagaggaggactcaggtgg 720
Query: 1269 caagaagaagcgttcaaacagaggacagggacaatcaacggatgatctgaataaaccact 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caagaagaagcgttcaaacagaggacagggacaatcaacggatgatctgaataaaccact 780
Query: 1329 gccgcaaggtagaagacgtcaggcgtttcctgcttctgggaaccgtagtgcaacgttccg 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gccgcaaggtagaagacgtcaggcgtttcctgcttctgggaaccgtagtgcaacgttccg 840
Query: 1389 ctgatac 1395
|||||||
Sbjct: 841 ctgatac 847
>gnl|LJGI|AV779026
Length = 405
Score = 139 bits (70), Expect = 5e-32
Identities = 113/126 (89%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 1271 agaagaagcgttcaaacagaggacagggacaatcaacggatgatctgaataaaccactgc 1330
||||||||||||| || |||| ||||||| ||||||||||||||||||| |||| || |
Sbjct: 405 agaagaagcgttcccaccgaggccagggaccatcaacggatgatctgaattaacccctcc 346
Query: 1331 cgcaaggtagaagacgtca-ggcgtttcctgcttctgggaaccgtagtgcaacgttccgc 1389
| | || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 345 ccccagctagaagacgtcacggcgtttcctgcttctgggtaccgtagtgcaacgttccgc 286
Query: 1390 tgatac 1395
||||||
Sbjct: 285 tgatac 280