Miyakogusa Predicted Gene

Lj0g3v0315349.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0315349.1 Non Chatacterized Hit- tr|F2UK21|F2UK21_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,36.91,3e-19,seg,NULL; RRM_5,NULL; RNA-binding domain, RBD,NULL;
RRM,RNA recognition motif domain; RNA recognitio,CUFF.21301.1
         (489 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70166 weakly similar to UniRef100_A9RHL7 Cluster: Pre...   825   0.0  

>gnl|LJGI|TC70166 weakly similar to UniRef100_A9RHL7 Cluster: Predicted protein; n=1;
            Physcomitrella patens subsp. patens|Rep: Predicted
            protein - Physcomitrella patens subsp. patens, partial
            (73%)
          Length = 1545

 Score =  825 bits (416), Expect = 0.0
 Identities = 465/489 (95%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgtctgtcaccccggctaaatttgagcagaaaggagacaagtttgtatcaaagcaagta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  atgtctgtcaccccggctaaatttgagcagaaaggagacaagtttgtatcaaagcaagta 628

                                                                        
Query: 61   gacaatnnnnnnnnnnnnnnnnnnnnnnnggtggaagacaaaatgcttggatggggtggt 120
            ||||||                       |||||||||||||||||||||||||||||||
Sbjct: 629  gacaataaaaagaaaaagaaattgaaaaaggtggaagacaaaatgcttggatggggtggt 688

                                                                        
Query: 121  cgtgatgatgcaaaattgtcaataccggcaactgttatccttcgttatatgttctctcca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  cgtgatgatgcaaaattgtcaataccggcaactgttatccttcgttatatgttctctcca 748

                                                                        
Query: 181  gctgaaatgagggctgatgaaaatttgcgcttagaactagaagaagatgttaaagaggaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  gctgaaatgagggctgatgaaaatttgcgcttagaactagaagaagatgttaaagaggaa 808

                                                                        
Query: 241  tgtacaaagcttggtcctatagactcagtcaaggtatgtgagaatcatcctcagggtgtt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  tgtacaaagcttggtcctatagactcagtcaaggtatgtgagaatcatcctcagggtgtt 868

                                                                        
Query: 301  gttttggtaagattcaaggataggaaggatgctcagacatgcatagatacgatgaatgga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  gttttggtaagattcaaggataggaaggatgctcagacatgcatagatacgatgaatgga 928

                                                                        
Query: 361  agatggtttggtggtagacagatacatgccagtgaagatgacggtttagttaaccatgcc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  agatggtttggtggtagacagatacatgccagtgaagatgacggtttagttaaccatgcc 988

                                                                        
Query: 421  ttggtccgggatttggatgaagatgccaagcggctggagcagtttggtgctgaacttgaa 480
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 989  ttggtccgggatttggatgaagatgccaagcgtctggagcagtttggtgctgaacttgaa 1048

                     
Query: 481  ggtgagtga 489
            |||||||||
Sbjct: 1049 ggtgagtga 1057