Miyakogusa Predicted Gene
- Lj0g3v0315179.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0315179.1 tr|G7L1F1|G7L1F1_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_7g075820 PE=4 SV=1,31.13,5e-19,domain in
FBox and BRCT domain containing pl,FBD; no description,NULL; FAMILY
NOT NAMED,NULL; seg,NU,gene.g24552.t1.1
(744 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome... 141 7e-33
gnl|LJGI|TC59854 similar to UniRef100_A7QK60 Cluster: Chromosome... 88 9e-17
gnl|LJGI|TC81934 similar to UniRef100_A7QK65 Cluster: Chromosome... 86 4e-16
gnl|LJGI|TC75628 weakly similar to UniRef100_A2Q1U7 Cluster: Cyc... 60 2e-08
gnl|LJGI|TC72625 similar to UniRef100_A7QK60 Cluster: Chromosome... 60 2e-08
gnl|LJGI|TC60064 58 8e-08
gnl|LJGI|TC74716 similar to UniRef100_A2Q1U7 Cluster: Cyclin-lik... 56 3e-07
gnl|LJGI|TC67732 similar to UniRef100_A7QK65 Cluster: Chromosome... 56 3e-07
gnl|LJGI|DC599890 similar to UniRef100_A7QK60 Cluster: Chromosom... 54 1e-06
gnl|LJGI|TC78334 similar to UniRef100_Q976J9 Cluster: Lysine bio... 52 5e-06
>gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 1489
Score = 141 bits (71), Expect = 7e-33
Identities = 125/143 (87%)
Strand = Plus / Plus
Query: 495 ttttgtgcctgaccctcatattgttccggaatgtcttacttcacagttcagaaagtgctc 554
|||| |||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 1078 ttttttgcctgaccctcattttgttcctgaatgccttacttcacagtttagaaagtgctc 1137
Query: 555 tgttgagtattataatggtacaccaagtgaactgcgatttgcaaaatatattatggagaa 614
| |||| ||||| |||||||| |||||| ||| |||||||||||||||| ||| ||||
Sbjct: 1138 tcttgaatattactatggtacagaaagtgagctgagatttgcaaaatatatcatgcagaa 1197
Query: 615 ttcaactactttacagaccatga 637
||| || ||||||| ||||||||
Sbjct: 1198 ttccacaactttacggaccatga 1220
Score = 58.0 bits (29), Expect = 8e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 80 cttcttcttctgttgagctcccctctctcaaatccctacatttggaaca 128
|||||||| | ||||| || ||||| |||||||||||||||||||||||
Sbjct: 603 cttcttctccagttgaacttccctcactcaaatccctacatttggaaca 651
>gnl|LJGI|TC59854 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 848
Score = 87.7 bits (44), Expect = 9e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 4 attagtttgaattgctgcattttcagctgtacaactcttgttgttctcaagttgaaaggg 63
|||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 542 attagtttgagctgctgcattttcagctgtagaactcttgttgttcttaagttgaaaggg 601
>gnl|LJGI|TC81934 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 1384
Score = 85.7 bits (43), Expect = 4e-16
Identities = 105/125 (84%), Gaps = 3/125 (2%)
Strand = Plus / Plus
Query: 4 attagtttgaattgctgcattttcagctgtacaactcttgttgttctcaagttgaaaggg 63
|||||||||| ||||||||||||| || ||| ||||||||||||||||| | ||||
Sbjct: 464 attagtttgagcagctgcattttcagttgccaaacccttgttgttctcaagttaacaggg 523
Query: 64 atatctctcaacgcttcttcttcttctgttgagctcccctctctcaaatccctacatttg 123
|||||||||| | ||| |||||| |||||||| ||||| |||||||||||| |||||
Sbjct: 524 ttatctctcaaag---ctttttcttccgttgagcttccctcactcaaatccctatatttg 580
Query: 124 gaaca 128
|||||
Sbjct: 581 gaaca 585
>gnl|LJGI|TC75628 weakly similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD;
n=1; Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (11%)
Length = 475
Score = 60.0 bits (30), Expect = 2e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 692 aattagcttcatgccaaaggagatctgcattgtgtgaactttcatt 737
||||||||| ||| | |||||||||||| |||||||||||||||||
Sbjct: 222 aattagctttatgtccaaggagatctgccttgtgtgaactttcatt 267
>gnl|LJGI|TC72625 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 1949
Score = 60.0 bits (30), Expect = 2e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 81 ttcttcttctgttgagctcccctctctcaaatccctacatttggaa 126
||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct: 1606 ttcttctcatgttgagcttccctcactcaaatccctacatttggaa 1651
Score = 52.0 bits (26), Expect = 5e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 22 attttcagctgtacaactcttgttgttctcaagttgaaaggg 63
|||| |||||| | ||| ||||||||||||||||||||||||
Sbjct: 1544 atttacagctgcagaacccttgttgttctcaagttgaaaggg 1585
>gnl|LJGI|TC60064
Length = 1179
Score = 58.0 bits (29), Expect = 8e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 17 gctgcattttcagctgtacaactcttgttgttctcaagttg 57
|||||||||||||||| | |||||||||||||||||||||
Sbjct: 358 gctgcattttcagctgcaagactcttgttgttctcaagttg 398
>gnl|LJGI|TC74716 similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD; n=1;
Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (7%)
Length = 503
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 592 tttgcaaaatatattatggagaattcaa 619
||||||||||||||||||||||||||||
Sbjct: 80 tttgcaaaatatattatggagaattcaa 107
>gnl|LJGI|TC67732 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 713
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 23 ttttcagctgtacaactcttgttgttctcaagttga 58
|||||||||||| ||||||||||||||| |||||||
Sbjct: 634 ttttcagctgtaaaactcttgttgttctgaagttga 669
>gnl|LJGI|DC599890 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 598
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 20 gcattttcagctgtacaactcttgttgttctcaagttga 58
||||||||||||| | |||||| ||||||||||||||||
Sbjct: 423 gcattttcagctgcaaaactctggttgttctcaagttga 461
>gnl|LJGI|TC78334 similar to UniRef100_Q976J9 Cluster: Lysine biosynthesis protein
lysX; n=1; Sulfolobus tokodaii|Rep: Lysine biosynthesis
protein lysX - Sulfolobus tokodaii, partial (5%)
Length = 671
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 591 atttgcaaaatatattatggagaattcaac 620
||||||||||||||||||||| ||||||||
Sbjct: 321 atttgcaaaatatattatggaaaattcaac 350