Miyakogusa Predicted Gene

Lj0g3v0314959.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0314959.1 tr|Q4ABN9|Q4ABN9_BRARP 80A08_28 OS=Brassica rapa
subsp. pekinensis GN=80A08_28 PE=4 SV=1,45.24,3e-19, ,CUFF.22265.1
         (378 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76235 similar to UniRef100_Q4ABN9 Cluster: 80A08_28; ...   355   1e-97
gnl|LJGI|TC71479 similar to UniRef100_Q4ABW2 Cluster: 4D11_25; n...   113   8e-25

>gnl|LJGI|TC76235 similar to UniRef100_Q4ABN9 Cluster: 80A08_28; n=1; Brassica rapa
           subsp. pekinensis|Rep: 80A08_28 - Brassica rapa subsp.
           pekinensis (Chinese cabbage), partial (25%)
          Length = 581

 Score =  355 bits (179), Expect = 1e-97
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 196 tgcatggcagttcaagtgccaaccttgcccacccataactctgttaatccgcccccagat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgcatggcagttcaagtgccaaccttgcccacccataactctgttaatccgcccccagat 60

                                                                       
Query: 256 ctttcaaaaactgcttccatggaaaattggccttacccttctcttcaaggtacaaggtac 315
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttcaaaaactgcttccatggagaattggccttacccttctcttcaaggtacaaggtac 120

                                                                       
Query: 316 tccaattacaagccattaggttggaaatgccattgtggtgaccacttcttcaacccttag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccaattacaagccattaggttggaaatgccattgtggtgaccacttcttcaacccttag 180

              
Query: 376 aaa 378
           |||
Sbjct: 181 aaa 183


>gnl|LJGI|TC71479 similar to UniRef100_Q4ABW2 Cluster: 4D11_25; n=1; Brassica rapa
           subsp. pekinensis|Rep: 4D11_25 - Brassica rapa subsp.
           pekinensis (Chinese cabbage), partial (30%)
          Length = 781

 Score =  113 bits (57), Expect = 8e-25
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                       
Query: 310 aggtactccaattacaagccattaggttggaaatgccattgtggtgaccacttcttcaac 369
           |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||
Sbjct: 481 aggtactccaattacaagccattgagttggaaatgccattgtggtggccacttcttcaac 540

                    
Query: 370 ccttagaaa 378
           |||||||||
Sbjct: 541 ccttagaaa 549



 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 106/125 (84%)
 Strand = Plus / Plus

                                                                       
Query: 100 cctgcaatttctcccagggagctgttatttgaggagaaaaataggttaggttcaatgcct 159
           ||||||||| |||| ||||| |  || || || |||||||| ||| ||||||||||||||
Sbjct: 280 cctgcaattcctccaagggacccatttttggatgagaaaaacaggctaggttcaatgcct 339

                                                                       
Query: 160 ccaagctgccacaacaagtgcaatgagtgtcatccatgcatggcagttcaagtgccaacc 219
           || |  ||||||||||| |||||  |||||||||||||||||||||| ||||| |||| |
Sbjct: 340 cctacatgccacaacaaatgcaaccagtgtcatccatgcatggcagtgcaagttccaaac 399

                
Query: 220 ttgcc 224
           |||||
Sbjct: 400 ttgcc 404