Miyakogusa Predicted Gene

Lj0g3v0314699.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0314699.1 Non Chatacterized Hit- tr|B8AGG1|B8AGG1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,69.05,2e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; seg,NULL,CUFF.21260.1
         (528 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80085 similar to UniRef100_A7P3V3 Cluster: Chromosome...   426   e-119
gnl|LJGI|TC65678 similar to UniRef100_A7P3V3 Cluster: Chromosome...   272   2e-72

>gnl|LJGI|TC80085 similar to UniRef100_A7P3V3 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (44%)
          Length = 791

 Score =  426 bits (215), Expect = e-119
 Identities = 215/215 (100%)
 Strand = Plus / Plus

                                                                       
Query: 299 cattcatttggtggatggtgggcttttactgggttgtctctggtggtgatatgcttatgc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cattcatttggtggatggtgggcttttactgggttgtctctggtggtgatatgcttatgc 60

                                                                       
Query: 359 aggatgccccacggttgtactggttggctgttgtttttctggcttttgatgtattctttg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aggatgccccacggttgtactggttggctgttgtttttctggcttttgatgtattctttg 120

                                                                       
Query: 419 ccatcttctgtgttgttttggcatgcttgattggcattgctctctgttgttgcttgccct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccatcttctgtgttgttttggcatgcttgattggcattgctctctgttgttgcttgccct 180

                                              
Query: 479 gcatcattgctattctctatgctgttgctggacag 513
           |||||||||||||||||||||||||||||||||||
Sbjct: 181 gcatcattgctattctctatgctgttgctggacag 215


>gnl|LJGI|TC65678 similar to UniRef100_A7P3V3 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (75%)
          Length = 1663

 Score =  272 bits (137), Expect = 2e-72
 Identities = 200/221 (90%)
 Strand = Plus / Plus

                                                                       
Query: 294 ggtttcattcatttggtggatggtgggcttttactgggttgtctctggtggtgatatgct 353
           |||||||||  |||||||||||||||||||||||||||| |||| |||||||||| | ||
Sbjct: 590 ggtttcattgctttggtggatggtgggcttttactgggtagtctgtggtggtgatgttct 649

                                                                       
Query: 354 tatgcaggatgccccacggttgtactggttggctgttgtttttctggcttttgatgtatt 413
           | |||| ||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 650 tctgcaagatgctccacgtttgtactggttggctgttgtctttctggcatttgatgtctt 709

                                                                       
Query: 414 ctttgccatcttctgtgttgttttggcatgcttgattggcattgctctctgttgttgctt 473
           |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 710 ctttgccatcttttgtgttgttttggcatgcttgattggcattgccctctgctgttgttt 769

                                                    
Query: 474 gccctgcatcattgctattctctatgctgttgctggacagg 514
           ||| || || |||| ||||||||||||||||||||||||||
Sbjct: 770 gccatgtattattggtattctctatgctgttgctggacagg 810



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  aacacgccgatccggctgtggattgtcggctacgcgctgcagtgcctcttgcatgtcgtg 129
           ||||||||||||||| |||||||   ||| |||||| | ||||||||  | ||  |||||
Sbjct: 360 aacacgccgatccggttgtggatctgcggttacgcggttcagtgcctggttcacctcgtg 419

                             
Query: 130 ctggtgtggttcgagtac 147
           ||||||||| ||||||||
Sbjct: 420 ctggtgtggctcgagtac 437