Miyakogusa Predicted Gene

Lj0g3v0314199.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0314199.1 tr|G7J350|G7J350_MEDTR E3 ubiquitin-protein
ligase RGLG2 OS=Medicago truncatula GN=MTR_3g086520 PE=4,73.77,0,Ring
finger,Zinc finger, RING-type; no description,Zinc finger,
RING/FYVE/PHD-type; ZF_RING_2,Zinc f,CUFF.21209.1
         (729 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC598835 similar to UniRef100_A7PM08 Cluster: Chromosom...    98   9e-20
gnl|LJGI|BW600112 similar to UniRef100_Q153E2 Cluster: Copine-li...    76   3e-13
gnl|LJGI|TC69360 similar to UniRef100_Q08ET6 Cluster: RING-finge...    66   3e-10
gnl|LJGI|TC62168 similar to UniRef100_A7PCN7 Cluster: Chromosome...    58   8e-08
gnl|LJGI|TC78635 similar to UniRef100_A7QST8 Cluster: Chromosome...    54   1e-06

>gnl|LJGI|DC598835 similar to UniRef100_A7PM08 Cluster: Chromosome chr14 scaffold_21,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_21, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (41%)
          Length = 563

 Score = 97.6 bits (49), Expect = 9e-20
 Identities = 214/269 (79%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccatgactattgttgagcaaagtggtggccaatatcatgttttgctaataattgca 60
           ||||||||||| ||||||||||| ||||| |||||||||||||||||| | ||| |||||
Sbjct: 137 atggccatgacaattgttgagcagagtggaggccaatatcatgttttggtgatagttgca 196

                                                                       
Query: 61  gatggtcaggtgaccagaagcattgatacaaagcacggccaattaagttcacaggaacag 120
           ||||| ||||| || ||||| ||||| ||  |    ||     ||||| ||||||| || 
Sbjct: 197 gatggccaggtaacaagaagtattgacactgaaagtgggaggctaagtccacaggagcaa 256

                                                                       
Query: 121 aagacaatagatgcaattgtaaaagccagcgattatccactgtcaatagttgtggtagga 180
           |||||  | ||||| |||||  | |||||  | | ||| || |||||  |  |||| || 
Sbjct: 257 aagactgttgatgctattgttgaggccagtaaatttcctctttcaatcatattggttggt 316

                                                                       
Query: 181 gttggagatggaccctgggatatgatgagggaatttgatgataacatcccttctcgggca 240
           |||||||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||| 
Sbjct: 317 gttggagatggaccttgggacatgatgagagagtttgatgataatatcccctctcgggcc 376

                                        
Query: 241 ttcgacaattttcagtttgtgaatttcac 269
           || || ||||| |||||||| ||||||||
Sbjct: 377 tttgataatttccagtttgtaaatttcac 405


>gnl|LJGI|BW600112 similar to UniRef100_Q153E2 Cluster: Copine-like protein; n=1;
           Oryza sativa Japonica Group|Rep: Copine-like protein -
           Oryza sativa subsp. japonica (Rice), partial (9%)
          Length = 468

 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 587 aggtttgtccgatttgtctcaccaatgggaaaaatatggcctttggttgcgggcatcaga 646
           ||||||| || |||||||| || ||||||||  ||||||| |||||||||||||||||||
Sbjct: 204 aggtttgccctatttgtcttactaatgggaaggatatggcttttggttgcgggcatcaga 263

                 
Query: 647 cttgtt 652
           ||||||
Sbjct: 264 cttgtt 269


>gnl|LJGI|TC69360 similar to UniRef100_Q08ET6 Cluster: RING-finger protein; n=1;
           Capsicum annuum|Rep: RING-finger protein - Capsicum
           annuum (Bell pepper), partial (24%)
          Length = 698

 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 579 tgataataaggtttgtccgatttgtctcaccaatgggaaaaatatggcctttggttgcgg 638
           ||||||| |||||||||| ||||| |||||| ||   || ||||||||||||||||| ||
Sbjct: 296 tgataatcaggtttgtcccatttgcctcaccgatcctaagaatatggcctttggttgtgg 355

                    
Query: 639 gcatcagac 647
           |||||||||
Sbjct: 356 gcatcagac 364


>gnl|LJGI|TC62168 similar to UniRef100_A7PCN7 Cluster: Chromosome chr17 scaffold_12,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_12, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (69%)
          Length = 907

 Score = 58.0 bits (29), Expect = 8e-08
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 16  gttgagcaaagtggtggccaatatcatgttttgctaataattgcagatggtcaggtgacc 75
           |||||||||||||| |||||||| ||||| ||| | || || |||||||| |||||||| 
Sbjct: 716 gttgagcaaagtggaggccaataccatgtcttggtgatcatagcagatggccaggtgaca 775

                
Query: 76  agaag 80
           |||||
Sbjct: 776 agaag 780


>gnl|LJGI|TC78635 similar to UniRef100_A7QST8 Cluster: Chromosome chr4 scaffold_162,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_162, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (76%)
          Length = 1554

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 173 tggtaggagttggagatggaccctgggatatgatgagggaatttgatgataacat 227
           |||| ||||||||||||||||| ||||||  ||||| | | ||||||||||||||
Sbjct: 869 tggttggagttggagatggaccatgggatgagatgaagaattttgatgataacat 923