Miyakogusa Predicted Gene

Lj0g3v0313859.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0313859.1 Non Chatacterized Hit- tr|J9I3H0|J9I3H0_9SPIT
cAMP-dependent protein kinase catalytic subunit,
putat,33.33,1.5,seg,NULL,CUFF.21196.1
         (661 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV780221 weakly similar to UniRef100_A2Q1A3 Cluster: RN...   345   2e-94
gnl|LJGI|GO033292 weakly similar to UniRef100_A2Q1A3 Cluster: RN...   127   9e-29

>gnl|LJGI|AV780221 weakly similar to UniRef100_A2Q1A3 Cluster: RNA-directed DNA
           polymerase; n=1; Medicago truncatula|Rep: RNA-directed
           DNA polymerase - Medicago truncatula (Barrel medic),
           partial (13%)
          Length = 461

 Score =  345 bits (174), Expect = 2e-94
 Identities = 328/378 (86%), Gaps = 1/378 (0%)
 Strand = Plus / Minus

                                                                       
Query: 171 ccccaaccagttttcattccagaattttgcttcattaccttccccaattcttctacacaa 230
           |||||||||||||||||||||||| ||  ||||| |||||||||| || |||| ||| ||
Sbjct: 458 ccccaaccagttttcattccagaacttgacttcagtaccttcccctatccttcgacataa 399

                                                                       
Query: 231 acccgtttgcatccatcccccgctaccatcttcaaagcacattgagtggaggtatttcca 290
           |||  ||||||||||||||||||  |||||||| || ||| ||||||||||||  |||||
Sbjct: 398 acctctttgcatccatcccccgcctccatcttcgaaacacgttgagtggaggtcgttcca 339

                                                                       
Query: 291 ccaagttgacgcattttggggaattgcattattatacttagtctgcagaaccttatacca 350
           |||| | || ||| |||||||||| ||||| ||||||||| ||  |||||||||||||||
Sbjct: 338 ccaactcgatgcactttggggaatggcattcttatacttaatcaacagaaccttatacca 279

                                                                       
Query: 351 tagtctatccctcgccttgagcatcctccaactccatttgcccaaaagggccttgttgaa 410
           || || ||||||| |||| ||||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 278 taatccatccctctccttaagcatcctccatctccacttgcccaaaagagccttgttgaa 219

                                                                       
Query: 411 caatctcaagttccgaacacccaaacgcccctcctccttgggtctacacaccaaacttca 470
           ||| | ||||||| |||| ||||||| |||||| |||||||||||||| |||  ||| ||
Sbjct: 218 caagcccaagttctgaacccccaaacccccctcgtccttgggtctacaaaccgtactcca 159

                                                                       
Query: 471 ctttacccaagctattttcttccccccttccacctccc-cccacaagaaagatctcatca 529
            ||||||||||||||||||||||| || |||||||||| |||| || || ||||||||||
Sbjct: 158 ttttacccaagctattttcttccctccctccacctccctcccaaaaaaaggatctcatca 99

                             
Query: 530 attgttcacatttgtgta 547
           ||||||||||||||||||
Sbjct: 98  attgttcacatttgtgta 81


>gnl|LJGI|GO033292 weakly similar to UniRef100_A2Q1A3 Cluster: RNA-directed DNA
           polymerase; n=1; Medicago truncatula|Rep: RNA-directed
           DNA polymerase - Medicago truncatula (Barrel medic),
           partial (21%)
          Length = 481

 Score =  127 bits (64), Expect = 9e-29
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                       
Query: 336 cagaaccttataccatagtctatccctcgccttgagcatcctccaactccatttgcccaa 395
           ||||||||||||||||| || ||||||| | || ||||||||||| ||||| ||||||||
Sbjct: 471 cagaaccttataccataatccatccctctcattaagcatcctccatctccacttgcccaa 412

                                                                       
Query: 396 aagggccttgttgaacaatctcaagttccgaacacccaaacgcccctcctccttgggtct 455
           ||| |||||||||||||| | ||||||| |||| ||||||| |||||| |||||||||||
Sbjct: 411 aagagccttgttgaacaagcccaagttctgaacccccaaacccccctcgtccttgggtct 352



 Score = 99.6 bits (50), Expect = 2e-20
 Identities = 119/141 (84%), Gaps = 2/141 (1%)
 Strand = Plus / Minus

                                                                       
Query: 522 tctcatcaattgttcacatttgtgtaagaccccctccgacaatttgaagaatgagagatg 581
           |||||||||||||||||||||||| |  ||||||  || ||||||||| || | ||| ||
Sbjct: 354 tctcatcaattgttcacatttgtgcagaacccccgtcggcaatttgaaaaaagggaggtg 295

                                                                       
Query: 582 gaatagaggaatagatgtaaggacacttttgatgaggcaaattctacccccaaatgaaa- 640
            |||||||| |  | | |||| ||||||||||||||||||| |||||||||||| |||| 
Sbjct: 294 aaatagagggagggctataagaacacttttgatgaggcaaagtctacccccaaaagaaag 235

                                
Query: 641 -gtattttgtttccaccttga 660
            || |||||||||||||||||
Sbjct: 234 tgtcttttgtttccaccttga 214